Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq601 111 2e-19 >seq601 Length=35606 Score = 111 bits (122), Expect = 2e-19 Identities = 223/328 (68%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 169126 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 169185 ||| || ||||| |||||||| |||| | ||| |||| | || ||||||||||| || Sbjct 29835 CTTCAGGAGACTGGGCCAGAAATAGTCCAGCATGTTGATCAGCAGCCCCTTGATGTGCGA 29776 Query 169186 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATC 169245 ||||||| || || ||||| ||||| | | | || ||||| ||| | | Sbjct 29775 CCCGTCGTGGTCCTGGTCGGTCATTATCATCACATGCCCGTACCGCAGCGAGTCCGCGGT 29716 Query 169246 TTGATAGTCCTTACCCTGTTGAAGACCCAAG-ATCTTCTTGAGATCGTTGAACTCTTGGT 169304 || || ||||| || || || |||||| |||||||||| ||||| ||| || Sbjct 29715 CTGGTACTCCTTCTTTTGCTGCAG-CCCAAGAATCTTCTTGATGCTGTTGACCTCGGCGT 29657 Query 169305 TTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGA 169364 | | ||||| || ||| || || |||||| ||| || || ||||||| Sbjct 29656 TCTCCATCAGCTGCTTGGGCATGGCCTCCCGGACATTCAGGAGCTTTCCCCGCAGAGGGA 29597 Query 169365 AGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCG 169424 | || ||||||| | || || || |||| || ||||| | ||| || | ||| || | Sbjct 29596 ACACCCCGTAGTTTGCGCGCCCGACAACGGCCAGCCCCGCAATTGCAAGCGCCTTGGCAG 29537 Query 169425 AGTCACCCTCGGTGACGATGAGCGTACA 169452 |||| |||||||||| || ||||| || Sbjct 29536 AGTCCCCCTCGGTGAGAATCAGCGTGCA 29509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248208857480