Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 149 2e-30
seq1 116 1e-20
seq655 84.2 7e-11
>seq1207
Length=23098
Score = 149 bits (164), Expect = 2e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|| ||||| | ||| | ||||||||| || || || || || || || || || || ||
Sbjct 18530 CCGCCACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 18589
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| ||||| ||| || || || || ||||| || || || || || ||||| || || ||
Sbjct 18590 AGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 18649
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
||||||||||| ||||| ||||| || || || || ||||| || | | |||||
Sbjct 18650 ATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACC 18709
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | |||||||||||| ||||| || ||||| ||||||||
Sbjct 18710 TCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756
>seq1
Length=85208
Score = 116 bits (128), Expect = 1e-20
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
|||||| || | | ||||||||||| || || ||||| || || || || || || ||
Sbjct 80265 ACCACCCCGCAGACGGAGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 80324
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| ||||| || || || || || ||||| || || || || | ||||| || || ||
Sbjct 80325 CAGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGG 80384
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||||| ||||| ||||| ||||| || || || || ||||| || | || || ||
Sbjct 80385 GATTCCCTCTTTGTCCTGGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGAC 80444
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
|| || || | ||||| || || ||||| || || || |||||||||
Sbjct 80445 CTCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGACGAAGATCTGCATT 80493
>seq655
Length=33610
Score = 84.2 bits (92), Expect = 7e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| | ||| |||| ||||||| ||||||||| |||||||||||| ||||||||| | |
Sbjct 9899 GGGGGTCTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGCACCGGGATCGATA 9958
Query 235950 CCCAGCATCTCCAT 235963
||||| | ||||||
Sbjct 9959 CCCAGGACCTCCAT 9972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515220871681781
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |