Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq601 159 4e-34 seq655 98.7 1e-15 >seq601 Length=35606 Score = 159 bits (176), Expect = 4e-34 Identities = 278/399 (70%), Gaps = 18/399 (5%) Strand=Plus/Minus Query 152766 CATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCAT 152825 |||||||| | || |||||||||||||| ||||| | ||| ||||||||| ||||| Sbjct 29805 CATGTTGATCAGCAGCCCCTTGATGTGCGACCCGTCGTGGTCCTGGTCGGTCATTATCAT 29746 Query 152826 CAGACGACCGTAGCGCAG---GTCACGTAGTGACCCGTAGACCTTTCCATGTTGAAGCCC 152882 || | | ||||| ||||| ||| || || | ||| |||| || || ||||| Sbjct 29745 CACATGCCCGTACCGCAGCGAGTC-CGCGGT--CTGGTACTCCTTCTTTTGCTGCAGCCC 29689 Query 152883 GAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATC 152942 || ||||| |||| | || | || | || || ||| ||| || | |||| || Sbjct 29688 AAGAATCTTCTTGATGCTGTTGACCTCGGCGTTCTCCATCAGCTGCTTGGGCATGGCCTC 29629 Query 152943 CCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTT---GCGGCCTAC 152999 ||| ||||| | |||||||||| || || ||||| ||| | ||| ||| || || Sbjct 29628 CCGGACATTCAGGAGCTTTCCCCGCAGAGGGAACACCCCGTA---GTTTGCGCGCCCGAC 29572 Query 153000 AACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGT 153059 |||| ||| || ||||| ||||| || || || ||||| |||||||||| ||| ||||| Sbjct 29571 AACGGCCAGCCCCGCAATTGCAAGCGCCTTGGCAGAGTCCCCCTCGGTGAGAATCAGCGT 29512 Query 153060 ACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGT 153119 ||||| | | | || ||||| ||| || ||||| ||||| ||||| ||||| Sbjct 29511 GCAGTCCCGCGCATCCTTTGTCCCGGCGTTGTTCGCATCGTCGAGCTTCGGGATCCCCGT 29452 Query 153120 GATCC---TGCTTTTCTTAGAGCCGTCGGTTTTCTTCAG 153155 | || ||| |||| ||||| || |||||||| Sbjct 29451 CAGCCGTATGCGCTTCT---GCCCGTCCGTCTTCTTCAG 29416 Score = 125 bits (138), Expect = 8e-24 Identities = 298/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 ||||||| || || ||| ||| || || | ||| | | ||| |||||||| |||||| Sbjct 30682 ACCCAGTCCCAATCCCCCGTGCGCCGTTGAACAGCAGAAACGGAACGACAGGCACGTAGT 30623 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--CT 117267 |||| ||||| | ||| ||||| || | ||| | ||| || || |||||| || Sbjct 30622 ACTCGGGCTCGATCTGGTCCCCGTCCTCGTCAAGGTAGTCGAGAACAGCGTTGTCAACCT 30563 Query 117268 CGGATCGAATATGTTCTTGGTCCACGGTG-CTAGGCGAGTGAAAATGTAACGAGAGCTTG 117326 ||| ||| || || | | | | | | ||| ||||||||||| | | ||||| Sbjct 30562 CGGG--GAAAATACTCCGCG-CGATGTTCTCCAGGGCTGTGAAAATGTATCTCGGGCTTG 30506 Query 117327 CAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCA 117386 | | || | ||||| || | || || ||||| || || | ||| || || |||| Sbjct 30505 CCGAGTCTGTCCCACCCGCCTGCCGAGTCCCGAACTGCCCGTTTGGCGACAGCAGATTCA 30446 Query 117387 GGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCT 117446 ||||||| ||| |||||||| || |||| |||||| || | ||||| || Sbjct 30445 CGTTGTTGCTGCCAACAAAGTTCTGTGCCATCCCGACAATGGTCGATGCAAGGCTATGCT 30386 Query 117447 CACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGT 117506 | || ||||| || || | |||||||| || || || | | ||| || ||||| || | Sbjct 30385 CCCCGTGGTGGTATGCAGAGTGCTCCGCAACATACCCGACAAACTGCGCGACCTTGATCT 30326 Query 117507 CTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566 | | | ||||||| ||||| |||| || | | ||| ||||| | ||||| || | Sbjct 30325 CGGCCTGCAGGTTCCGCTTGAAGCAGCTGTAGAGAATCTTCCGCTGCCCAGGCTTGAGCC 30266 Query 117567 CATCCGCCACGTGAGGGATCGAACGC 117592 | || || || || ||||| ||| Sbjct 30265 CGTCGACCGCGGACGGAATCGACCGC 30240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 119090 AGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTG 119149 ||||| || |||||||||||||| || ||||||| || ||||||||||||||||||| Sbjct 28670 AGCTTTGCCCCGTATCCGTTCCGCCCGCCGGTCATCTTCTTCTCCTCGTCGTTGTAGTTG 28611 Query 119150 GAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 || |||| || ||||| || || ||||| ||||| Sbjct 28610 GACGACGTCAGCAGATGCCCGAAAATAAGCTCCGGGAT 28573 >seq655 Length=33610 Score = 98.7 bits (108), Expect = 1e-15 Identities = 279/426 (65%), Gaps = 2/426 (0%) Strand=Plus/Minus Query 53321 CAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAG 53380 ||| | || |||||||| || || ||||| || |||||||| | || |||||| || Sbjct 30422 CAGCTTTCCAGCTGCTTTGTGCTGACGATGGCCGACGACTCGATGAAGGGGATCTACAAG 30363 Query 53381 ACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG 53440 || || | |||| || | || || || | || ||||| | || | Sbjct 30362 ACACTGACACAGTGCGCGCTGATATCGCAGACAGGCGCAGGCATCGGGCTGAACATCCAC 30303 Query 53441 AACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTG 53500 ||| |||| || | ||| | | ||| ||| || |||||||| | | || || || Sbjct 30302 AACATCCGGGCAAGCGGGTCTCTTATCCGGGGAACAAACGGCGTTTCAAACGGTATTGTT 30243 Query 53501 CCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGC 53560 || |||||||| ||||| | ||||| ||||| | ||||||| || | || | Sbjct 30242 CCGATGCTCCGTGTCTTTGATGCAACGGCACGGTATGCGGACCAGGGAGGAAGCAAAAGA 30183 Query 53561 AAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAG 53620 ||| |||| || |||||||||||||||||||| || || | |||| || ||| | Sbjct 30182 CCGGGCGCGTTTGCGATCTACCTCGAGCCGTGGCATGCGGATGTGCTGGACTTCCTCTCG 30123 Query 53621 CTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGG 53680 || ||| ||| | || ||| | ||| || ||||||| || |||||| Sbjct 30122 CTCAAGAAGAACACGGGCAAGGAGGAGTTCCGCGCACGGGACCTGTCCTATGCGCTGTGG 30063 Query 53681 ATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAG-TGGTACCTGATGTGCCC 53739 || || ||||| || |||| |||||||| ||| |||| ||| ||| | || || Sbjct 30062 ATGCCAGACCTGTTTATGCGGCGCGTGGAGAACAACG-GGAGCTGGACGCTGTTCTGTCC 30004 Query 53740 GAACGA 53745 |||||| Sbjct 30003 GAACGA 29998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204186974600