Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq601 159 4e-34
seq655 98.7 1e-15
>seq601
Length=35606
Score = 159 bits (176), Expect = 4e-34
Identities = 278/399 (70%), Gaps = 18/399 (5%)
Strand=Plus/Minus
Query 152766 CATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCAT 152825
|||||||| | || |||||||||||||| ||||| | ||| ||||||||| |||||
Sbjct 29805 CATGTTGATCAGCAGCCCCTTGATGTGCGACCCGTCGTGGTCCTGGTCGGTCATTATCAT 29746
Query 152826 CAGACGACCGTAGCGCAG---GTCACGTAGTGACCCGTAGACCTTTCCATGTTGAAGCCC 152882
|| | | ||||| ||||| ||| || || | ||| |||| || || |||||
Sbjct 29745 CACATGCCCGTACCGCAGCGAGTC-CGCGGT--CTGGTACTCCTTCTTTTGCTGCAGCCC 29689
Query 152883 GAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATC 152942
|| ||||| |||| | || | || | || || ||| ||| || | |||| ||
Sbjct 29688 AAGAATCTTCTTGATGCTGTTGACCTCGGCGTTCTCCATCAGCTGCTTGGGCATGGCCTC 29629
Query 152943 CCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTT---GCGGCCTAC 152999
||| ||||| | |||||||||| || || ||||| ||| | ||| ||| || ||
Sbjct 29628 CCGGACATTCAGGAGCTTTCCCCGCAGAGGGAACACCCCGTA---GTTTGCGCGCCCGAC 29572
Query 153000 AACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGT 153059
|||| ||| || ||||| ||||| || || || ||||| |||||||||| ||| |||||
Sbjct 29571 AACGGCCAGCCCCGCAATTGCAAGCGCCTTGGCAGAGTCCCCCTCGGTGAGAATCAGCGT 29512
Query 153060 ACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGT 153119
||||| | | | || ||||| ||| || ||||| ||||| ||||| |||||
Sbjct 29511 GCAGTCCCGCGCATCCTTTGTCCCGGCGTTGTTCGCATCGTCGAGCTTCGGGATCCCCGT 29452
Query 153120 GATCC---TGCTTTTCTTAGAGCCGTCGGTTTTCTTCAG 153155
| || ||| |||| ||||| || ||||||||
Sbjct 29451 CAGCCGTATGCGCTTCT---GCCCGTCCGTCTTCTTCAG 29416
Score = 125 bits (138), Expect = 8e-24
Identities = 298/446 (67%), Gaps = 6/446 (1%)
Strand=Plus/Minus
Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209
||||||| || || ||| ||| || || | ||| | | ||| |||||||| ||||||
Sbjct 30682 ACCCAGTCCCAATCCCCCGTGCGCCGTTGAACAGCAGAAACGGAACGACAGGCACGTAGT 30623
Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--CT 117267
|||| ||||| | ||| ||||| || | ||| | ||| || || |||||| ||
Sbjct 30622 ACTCGGGCTCGATCTGGTCCCCGTCCTCGTCAAGGTAGTCGAGAACAGCGTTGTCAACCT 30563
Query 117268 CGGATCGAATATGTTCTTGGTCCACGGTG-CTAGGCGAGTGAAAATGTAACGAGAGCTTG 117326
||| ||| || || | | | | | | ||| ||||||||||| | | |||||
Sbjct 30562 CGGG--GAAAATACTCCGCG-CGATGTTCTCCAGGGCTGTGAAAATGTATCTCGGGCTTG 30506
Query 117327 CAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCA 117386
| | || | ||||| || | || || ||||| || || | ||| || || ||||
Sbjct 30505 CCGAGTCTGTCCCACCCGCCTGCCGAGTCCCGAACTGCCCGTTTGGCGACAGCAGATTCA 30446
Query 117387 GGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCT 117446
||||||| ||| |||||||| || |||| |||||| || | ||||| ||
Sbjct 30445 CGTTGTTGCTGCCAACAAAGTTCTGTGCCATCCCGACAATGGTCGATGCAAGGCTATGCT 30386
Query 117447 CACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGT 117506
| || ||||| || || | |||||||| || || || | | ||| || ||||| || |
Sbjct 30385 CCCCGTGGTGGTATGCAGAGTGCTCCGCAACATACCCGACAAACTGCGCGACCTTGATCT 30326
Query 117507 CTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566
| | | ||||||| ||||| |||| || | | ||| ||||| | ||||| || |
Sbjct 30325 CGGCCTGCAGGTTCCGCTTGAAGCAGCTGTAGAGAATCTTCCGCTGCCCAGGCTTGAGCC 30266
Query 117567 CATCCGCCACGTGAGGGATCGAACGC 117592
| || || || || ||||| |||
Sbjct 30265 CGTCGACCGCGGACGGAATCGACCGC 30240
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 119090 AGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTG 119149
||||| || |||||||||||||| || ||||||| || |||||||||||||||||||
Sbjct 28670 AGCTTTGCCCCGTATCCGTTCCGCCCGCCGGTCATCTTCTTCTCCTCGTCGTTGTAGTTG 28611
Query 119150 GAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187
|| |||| || ||||| || || ||||| |||||
Sbjct 28610 GACGACGTCAGCAGATGCCCGAAAATAAGCTCCGGGAT 28573
>seq655
Length=33610
Score = 98.7 bits (108), Expect = 1e-15
Identities = 279/426 (65%), Gaps = 2/426 (0%)
Strand=Plus/Minus
Query 53321 CAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAG 53380
||| | || |||||||| || || ||||| || |||||||| | || |||||| ||
Sbjct 30422 CAGCTTTCCAGCTGCTTTGTGCTGACGATGGCCGACGACTCGATGAAGGGGATCTACAAG 30363
Query 53381 ACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG 53440
|| || | |||| || | || || || | || ||||| | || |
Sbjct 30362 ACACTGACACAGTGCGCGCTGATATCGCAGACAGGCGCAGGCATCGGGCTGAACATCCAC 30303
Query 53441 AACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTG 53500
||| |||| || | ||| | | ||| ||| || |||||||| | | || || ||
Sbjct 30302 AACATCCGGGCAAGCGGGTCTCTTATCCGGGGAACAAACGGCGTTTCAAACGGTATTGTT 30243
Query 53501 CCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGC 53560
|| |||||||| ||||| | ||||| ||||| | ||||||| || | || |
Sbjct 30242 CCGATGCTCCGTGTCTTTGATGCAACGGCACGGTATGCGGACCAGGGAGGAAGCAAAAGA 30183
Query 53561 AAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAG 53620
||| |||| || |||||||||||||||||||| || || | |||| || ||| |
Sbjct 30182 CCGGGCGCGTTTGCGATCTACCTCGAGCCGTGGCATGCGGATGTGCTGGACTTCCTCTCG 30123
Query 53621 CTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGG 53680
|| ||| ||| | || ||| | ||| || ||||||| || ||||||
Sbjct 30122 CTCAAGAAGAACACGGGCAAGGAGGAGTTCCGCGCACGGGACCTGTCCTATGCGCTGTGG 30063
Query 53681 ATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAG-TGGTACCTGATGTGCCC 53739
|| || ||||| || |||| |||||||| ||| |||| ||| ||| | || ||
Sbjct 30062 ATGCCAGACCTGTTTATGCGGCGCGTGGAGAACAACG-GGAGCTGGACGCTGTTCTGTCC 30004
Query 53740 GAACGA 53745
||||||
Sbjct 30003 GAACGA 29998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547204186974600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |