Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq655 138 1e-27 seq1 136 5e-27 seq1207 134 2e-26 seq944 127 2e-24 seq601 116 4e-21 >seq655 Length=33610 Score = 138 bits (152), Expect = 1e-27 Identities = 670/1049 (64%), Gaps = 34/1049 (3%) Strand=Plus/Plus Query 80037 CGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGA 80096 ||| ||||||||||||||||| ||||| || ||||||||||||||||| | |||||| Sbjct 28836 CGTTCGCAGATAGTACATGCCGGTCTTCAGCCCCTTCTTCCAGCCGTAGAAGTGCATGCT 28895 Query 80097 ACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGAT 80156 | || || | || || | | ||| ||||||| || ||||| || ||| Sbjct 28896 CGTCAGGCGCGAATAGGTTGGCTCGGCAATGTAGATGTTGAGCGACTGGCTTTGGTCGAT 28955 Query 80157 GAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | | | ||| || ||||| ||||| | || || ||| || || || ||||| || || Sbjct 28956 GTACGGCCCGCGGTCTGCTGCCATCTGGATGATGTTCTTCTGCGGGATCTCCCACACCGT 29015 Query 80217 ACGATACACCTTACGAAGCTCCTCTGGAATGTCCA-GATTT--TGCACACTGCCACCGTC 80273 || || | | | |||||| | || || | ||| || | | || ||| Sbjct 29016 CCGGTAGAGCCTCTTCAGCTCCGCCGGGATTGCTGCGATGCGCTGGATAGACCCGTTGTC 29075 Query 80274 CTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATC---TTT 80330 || || || | || || | |||| | ||| || | ||| || | | Sbjct 29076 TGCTATCATCTGTGTCTTTGTCTCCGCGTTCCACAGCCCACGCCGGCACAGCTCCCGTAT 29135 Query 80331 CACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTT 80390 || | | || ||| | ||| ||||| || || || ||||||| ||| ||||| Sbjct 29136 CATA--GCGCC-GTTGACCATCTGGAACTCGCCAGCAAGAACCCGACGCACATAGAGGTT 29192 Query 80391 TGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGG 80450 | ||||| ||||| | | ||| | |||||||| | | |||| || ||||| Sbjct 29193 GCTGGTGTACGGCTCCACGGTCTCCGAGAACCCGAGGATGTTCGACGTGGATGCGGTCGG 29252 Query 80451 CATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATC 80510 ||| || | || | || || |||||||| ||||||| |||||| | ||| |||| | Sbjct 29253 CATGGGCGCAACAAGAAGCGAGTTCCGCAGCCCGTGCTCCTTGATCTTCTCCCGCAGG-C 29311 Query 80511 TGACCAAAAA--TCAACCCCAACGCTGTGA--------CCCCACATGTCGTGCTGCAAGA 80560 || || | || | | ||| | | |||||||||||| ||||| || Sbjct 29312 TGTCCCAGTTGTTCTCCTCTGTCGCCGGGGGAGTCACGCCCCACATGTCGCACTGCAGGA 29371 Query 80561 TGCCCTCCGACGCC-GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCC-AG 80618 |||| | | | | ||||||||||| | || || ||||| | || ||| || Sbjct 29372 AGCCC-CGGCTGACTGGAGACCCCGCATAGCTCGGATAGACGCCCTTC-TCGAGGCTGAG 29429 Query 80619 CTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACC 80678 ||| ||||| || ||||| ||||| || | ||| || | | | ||| | | Sbjct 29430 CTCGCACGAGGCCTCGAGGGCTGCGTGGTACACCGTCTCGAATATCCGCCGGTTGATGGC 29489 Query 80679 GCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCA--TCAT-GAACACGTCAGCCAGGCC 80735 ||| ||| | |||||||| | || | | ||| ||| || || || || || Sbjct 29490 GCGGCCCTCCTCGGAGTCGAACGGGA---CCTTTAGCTCACAGAAAACATCCGCAAGTCC 29546 Query 80736 CTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGG 80795 ||| || |||| | | | ||||||||| ||| |||||| || |||| | || || Sbjct 29547 CTGCACACCGAGGCCAAGCGGGCGGTGTCGCAGGTTCGAGGTCTTTGCCTTCTCAAGCGG 29606 Query 80796 GTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATG 80855 ||| ||| || ||||||| || |||||| ||||| | | | ||| || | || Sbjct 29607 GTACCGGTTGTTGTCGATGATCTTGTCCAGGTTCCGTGTTGCGATCTTTGTCACCTTGTG 29666 Query 80856 AAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAG 80915 || | |||||| | | ||| | ||| | ||| || | || ||| | || Sbjct 29667 GAGAAGCGCGTAGTCGAGCTTGCCGTCCTCGATAAACGACGGCAGCCCAAGAGACCCGAG 29726 Query 80916 ATTGCACACGGCCACCTCTTCAGC--ATCTGTAAACTCGACGATTTCCGTGCACAAATTA 80973 |||||| || | | ||| || | | |||| ||||||||| |||||||||| || Sbjct 29727 ATTGCAGACCGAGATCTCCTCCGGCGACATGTA--CTCGACGATCTCCGTGCACAGGTTG 29784 Query 80974 GAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAG 81033 ||| ||||| ||||||| | ||||||| ||| |||||| ||||||||||| Sbjct 29785 CTCCCCTTGATTGTCCCCAGGTGCTGGTGGTTTGTCTTTCGGTTGCACGCGTCCTTGTAC 29844 Query 81034 CACATGTACGGGGTACCGGTCTCGACCTG 81062 ||||||||| | |||||||||| ||| Sbjct 29845 ATGATGTACGGGTTTCCGGTCTCGATCTG 29873 >seq1 Length=85208 Score = 136 bits (150), Expect = 5e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || || ||||| || || || ||||| || |||| Sbjct 80493 AATGCAGATCTTCGTCAAGACACTGACAGGGAAGACGATCACCCTCGAGGTCGATTCAGC 80434 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || || | | ||||| ||||| |||||||| |||||||| || |||||||| Sbjct 80433 CGAGTCGATCGAGTCGGTCAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGACCA 80374 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || ||||| || || ||||| |||||||| | | || || | ||||| || Sbjct 80373 GCAGAGACTCATTTTCGCGGGAAAGCAGCTCGAGGACGGAAGAACACTGTCCGACTACAA 80314 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || | ||||| || ||||| Sbjct 80313 CATCCAGAAGGAGTCGACGCTGCATCTTGTTCTCCGTCTGCGGGGTGG 80266 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 || || || || ||||| || || | || | | || |||||||| || ||||||||| Sbjct 27522 GTCGAGGGGATCTTCTTCTCGGGCGCGTTTGCTGCGATCTTCTGGCTGAAGAAGCGGGGC 27463 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 ||| |||| || ||| | || ||||||||||||||| ||||||||||| | |||| Sbjct 27462 CTGCTGCCTGGGCTGACCTTCTCGAACGAGCTGATCAGCCGGGACGAGGGAGTGCACCGC 27403 Query 64858 GAATTTGCGGTTACC--CTGTTCAGCCACCTCAAGGACAAACCATCACA 64904 || |||||| | || ||| | | ||| ||||| |||| || || || Sbjct 27402 GACTTTGCG--TGCCTGCTGATGCGGCACATCAAGAACAAGCCGTCGCA 27356 >seq1207 Length=23098 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||| ||||| || || ||||||||||| || | Sbjct 18756 ATGCAGATCTTTGTGAAGACACTGACCGGAAAGACAATCACGCTTGAGGTTGACTCGGCC 18697 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | | ||||| ||||| |||||||| || ||||| || || |||||| Sbjct 18696 GAGTCGATCGAGTCCGTCAAGGCAAAAATACAGGACAAAGAAGGAATCCCCCCGGACCAG 18637 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| || ||||| | | || || | ||||| || Sbjct 18636 CAGCGACTGATTTTCGCAGGAAAGCAGCTGGAGGACGGGAGAACACTCTCGGACTACAAC 18577 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| || ||| | || || || || Sbjct 18576 ATCCAGAAGGAATCGACGCTCCATCTTGTTTTGAGACTGCGTGGCGG 18530 >seq944 Length=26795 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || |||||||| || ||||| || || || || ||||| || || Sbjct 9638 AATGCAGATCTTCGTAAAGACGCTGACAGGCAAAACAATCACACTCGAGGTGGATGCATC 9579 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||| | | | ||| | ||||| ||||||||||||||||| || ||||| || Sbjct 9578 CGAATCCATCGACTCTGTCAAGACAAAAATCCAGGACAAGGAGGGAATCCCGCCAGATCA 9519 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || ||||| ||||| ||||| || | | || || | ||||| || Sbjct 9518 GCAGAGACTGATATTCGCTGGGAAGCAGCTCGAAGACGGAAGAACACTCTCGGACTACAA 9459 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || || || || || |||||||| | || || Sbjct 9458 CATACAAAAGGAATCGACACTCCACCTTGTGCTGCGTCTTAGAGGCGG 9411 >seq601 Length=35606 Score = 116 bits (128), Expect = 4e-21 Identities = 234/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 31198 ACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGC 31257 ||||| || |||||||||||||| || ||| ||||| || | | ||| || ||| Sbjct 29452 ACGGGGATCCCGAAGCTCGACGATGCGAACAACGCCGGGACAAAGGATGCGCGGGACTGC 29511 Query 31258 ACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTT 31317 ||||| ||| | |||||||| ||||| || ||||||||||| ||||| || || ||| Sbjct 29512 ACGCTGATTCTCACCGAGGGGGACTCTGCCAAGGCGCTTGCAATTGCGGGGCTGGCCGTT 29571 Query 31318 GTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGAC 31377 || |||||| | ||||||||| || || || || |||| | || || || || Sbjct 29572 GTCGGGCGCGCAAACTACGGGGTGTTCCCTCTGCGGGGAAAGCTCCTGAATGTCCGGGAG 29631 Query 31378 GCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGG 31437 ||| || ||| | | ||| || | ||| | || | | || ||||| || ||| Sbjct 29632 GCCATGCCCAAGCAGCTGATGGAGAACGCCGAGGTCAACAGCATCAAGAAGATTCTTGGG 29691 Query 31438 CTTCAGCATGGCAAGGTATATAATTCACTGAGAGAAT---TGCGGTACGGTCGCCTCATG 31494 || ||||| |||| || | || | | || | |||||||||| | | ||| Sbjct 29692 CTGCAGCAAAAGAAGGAGTACCA--GACCGCG-GACTCGCTGCGGTACGGGCATGTGATG 29748 Query 31495 ATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 || ||||||||| || | |||||| ||||||||||| || Sbjct 29749 ATAATGACCGACCAGGACCACGACGGGTCGCACATCAAGGGGCT 29792 Score = 104 bits (114), Expect = 3e-17 Identities = 299/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 31962 GCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGC 32021 |||||| ||||| || || ||||| ||||||||| ||||| ||| | | ||| Sbjct 30240 GCGGTCGATTCCGTCCGCGGTCGACGGGCTCAAGCCTGGGCAGCGGAAGATTCTCTACAG 30299 Query 32022 CTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCT-GTCGGGCTACGTGG 32080 |||| ||||| ||||||| | || || ||||| |||||| | |||||| || || | Sbjct 30300 CTGCTTCAAGCGGAACCTGCAGGCCGAGATCAAGGTCGCGCAGTTTGTCGGG-TATGTTG 30358 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGC--TCCAGGGCACCATTGTCAACCT 32138 | ||||| | || || |||||||| ||| | | || | || | ||||||||| | Sbjct 30359 CGGAGCACTCTGCATACCACCACGGGGAG-CATAGCCTTGCATCG-ACCATTGTCGGGAT 30416 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 || ||||||||||| || || ||| |||| | || |||| || ||||| || Sbjct 30417 GGCACAGAACTTTGTTGGCAGCAACAACGTGAATCTGCTGTCGCCAAACGGGCAGTTCGG 30476 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCG- 32257 ||| |||| || ||||| | || | || ||| | | ||||| ||||| || | Sbjct 30477 GACTCGGCAGGCGGGTGGGACAGACTCGGCAAGCCCGAGATACATTTTCACAGCCCTGGA 30536 Query 32258 CACCTTCGACGCGCAAGATTTTCGACCCGTCG--GACGATGCGGTGCTCAAGTACAATTT 32315 | | ||| |||| | |||||| |||| | ||| | || || ||| | ||| | Sbjct 30537 GAACATCG-CGCGGAGTATTTTC--CCCGAGGTTGACAACGCTGTTCTCGACTACCTTGA 30593 Query 32316 TGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGT 32375 || ||||| | | | ||||||| | || |||| || || ||||| | | || | Sbjct 30594 CGAGGACGGGGACCAGATCGAGCCCGAGTACTACGTGCCTGTCGTTCCGTTTCTGCTGTT 30653 Query 32376 GAACGGTGCAGAAGGCATCGGAACGGGGT 32404 ||||| ||| || || || || |||| Sbjct 30654 CAACGGCGCACGGGGGATTGGGACTGGGT 30682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298088424240