Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq779 172 4e-38 seq1675 91.5 1e-13 >seq779 Length=31144 Score = 172 bits (190), Expect = 4e-38 Identities = 289/414 (70%), Gaps = 17/414 (4%) Strand=Plus/Minus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||||| ||| | ||| || | ||| |||||||| || | ||| || || || | ||| Sbjct 16075 GTAGATGTGCGTGTCGCCGATAAAGTGAACAAACTCCCCGGTTTCCAGGCCAGTCAGGTG 16016 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 || | |||||||| |||| |||||| || ||||| || || || || ||||| || Sbjct 16015 CGCGACAATGTACGTCAGGATCGAGTAGGACGCAATGTTGAACGGAACGCCAAGCCCGAT 15956 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30075 |||||| |||| |||||| ||| || |||| | |||| || |||||||| | Sbjct 15955 GTCCCCAGACCGCTGGTAAAGCGCGCAGCTCAGCTTCCTGTCGGAGACATAAAACTGGAA 15896 Query 30076 CATGGCGT--GGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGC 30131 || |||| ||||||| |||||| |||| ||||| | | ||| ||||| || | Sbjct 15895 CA--GCGTTGGGCACGGCGGAAGAACCATCAGAGGCGCTG--CAACGGGATTCCACGCAC 15840 Query 30132 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG------ATGAGGTCCACGGCGTTTT 30185 || | || |||||||| | || |||||| | || ||| | | |||| Sbjct 15839 TGACAACCATCCGCCTGTCGT---GGATGTTCCCGCTTTTTATCGTGTCAATCACCTTTT 15783 Query 30186 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGA 30245 |||||||||| ||||| ||| | |||||| | |||| ||||||| || || | Sbjct 15782 GCAGCTGATCGACCCCTTCCCCGGTGTAGTCGGTGTAGCAGTCCTTGTACTCGGCCCCAA 15723 Query 30246 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCT 30299 |||||||||||||||| |||||||| || || || || ||||| ||||||| || Sbjct 15722 AATGCCTCCACTGGAAGCCGTACACAGGCCCGAGATCCCCCTCGTCCCTGTCCT 15669 >seq1675 Length=15499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/155 (76%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 52758 CACCCAGAGATGGGCGACAAGTTTGCGT-CGTTCACGGCGCAAAAGGGGACGTGCGGAGC 52816 || || ||||| || ||||||||| | | ||||| ||| |||||| ||||| Sbjct 10998 CAGCCCGAGATTGGGGACAAGTTTTCCAGCAGGCACGG-GCAGAAGGGGGTCTGCGGGAT 10940 Query 52817 CGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGA-CGGGGTGGTGCCCG-ACCTCATC 52874 ||||||| | |||||||||||||| || ||| || |||||| |||||| || | ||| Sbjct 10939 CGTCCTGCCACAGGAGGACATGCCGTTT-ACAGAGAGCGGGGTC-TGCCCGGACATAATC 10882 Query 52875 ATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 52909 || ||||| |||| ||| || |||||||||||||| Sbjct 10881 ATGAACCCGCACGGCTTCCCGTCCAGGATGACCGT 10847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406301848054884