Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq944 104 1e-17 >seq944 Length=26795 Score = 104 bits (114), Expect = 1e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||||||||||| ||| | ||||| || |||||||| ||||| || || || Sbjct 9411 CCGCCTCTAAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAG 9470 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| ||||||| || || || || || ||||| | | ||| || || ||||| Sbjct 9471 AGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGG 9530 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTG-TGTCTTCG---CTCTC 34655 | |||||||||||| ||| |||||| || || | | | | || |||| || Sbjct 9531 ATTCCCTCCTTGTCCTGGAT-TTTTGTCTT---GACAGAGTCGATGGATTCGGATGCATC 9586 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || | || || ||||| || || | ||| || || || |||||||| Sbjct 9587 CACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCAT 9637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722975630391