Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1207 123 2e-23 seq1 113 4e-20 >seq1207 Length=23098 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||||||| ||| | || || ||||| || || || | Sbjct 18757 CATGCAGATCTTTGTGAAGACACTGACCGGAAAGACAATCACGCTTGAGGTTGACTCGGC 18698 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||| ||| ||||| |||||| || ||||||||||| || || || || || Sbjct 18697 CGAGTCGATCGAGTCCGTCAAGGCAAAAATACAGGACAAAGAAGGAATCCCCCCGGACCA 18638 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| || || || |||| ||| | || | || || ||||| Sbjct 18637 GCAGCGACTGATTTTCGCAGGAAAGCAGCTGGAGGACGGGAGAACACTCTCGGACTACAA 18578 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||| ||||| | ||| | |||||| | |||| || || Sbjct 18577 CATCCAGAAGGAATCGACGCTCCATCTTGTTTTGAGACTGCGTGGCGG 18530 >seq1 Length=85208 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || || || | || Sbjct 80492 ATGCAGATCTTCGTCAAGACACTGACAGGGAAGACGATCACCCTCGAGGTCGATTCAGCC 80433 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| ||| |||||| |||||| || |||||||| || || || || || || Sbjct 80432 GAGTCGATCGAGTCGGTCAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGACCAG 80373 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || | || ||| | || | ||||| |||||| Sbjct 80372 CAGAGACTCATTTTCGCGGGAAAGCAGCTCGAGGACGGAAGAACACTGTCCGACTACAAC 80313 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | ||| | ||| | ||| |||||||||| Sbjct 80312 ATCCAGAAGGAGTCGACGCTGCATCTTGTTCTCCGTCTGCGGGGTGG 80266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909011199040