Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq779 125 6e-24
>seq779
Length=31144
Score = 125 bits (138), Expect = 6e-24
Identities = 237/344 (69%), Gaps = 5/344 (1%)
Strand=Plus/Plus
Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445
|||| ||||| || | || || || ||||| ||||||||||| || |||||||| ||||
Sbjct 15675 GGGACGAGGGGGATCTCGGGCCTGTGTACGGCTTCCAGTGGAGGCATTTTGGGGCCGAGT 15734
Query 34446 ATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCG 34505
| || || | | ||||| | || | || | || |||||||| | ||||| |
Sbjct 15735 ACAAGGACTGCTACACCGACTACACCGGGGAAGGGGTCGATCAGCTGCAAAAGGTGATTG 15794
Query 34506 ACACCTTGAA--GCGGAACCCTG-ATGACAGAAGGATCGTGATGTGCGCGTGGAA-CCCG 34561
|||| | || |||| | | | | ||||| |||| || | | |||||||| ||||
Sbjct 15795 ACACGATAAAAAGCGGGAACATCCACGACAGGCGGATGGTTGTCAGTGCGTGGAATCCCG 15854
Query 34562 AAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG 34621
| | | || |||||||| || || ||||||| || || | ||| || || ||| |
Sbjct 15855 TTGCAGCGCC-TCTGATGGTTCTTCCGCCGTGCCCAACGCTGTTCCAGTTTTATGTCTCC 15913
Query 34622 AATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCG 34681
| || ||||| |||| ||| || || || || || ||||| ||| | || || |||
Sbjct 15914 GACAGGAAGCTGAGCTGCGCGCTTTACCAGCGGTCTGGGGACATCGGGCTTGGCGTTCCG 15973
Query 34682 TTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||||||||| ||| | | || |||||||| |||| ||
Sbjct 15974 TTCAACATTGCGTCCTACTCGATCCTGACGTACATTGTCGCGCA 16017
Score = 125 bits (138), Expect = 6e-24
Identities = 237/344 (69%), Gaps = 5/344 (1%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| |||| |||||||| || | | ||| |||||||||||||| || || | |||
Sbjct 16017 TGCGCGACAATGTACGTCAGGATCGAGTAGGACGCAATGTTGAACGGAACGCCAAGCCCG 15958
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||| || || || || || ||| |||| ||||| || | | ||| || || |||
Sbjct 15957 ATGTCCCCAGACCGCTGGTAAAGCGCGCAGCTCAGCTTCCTGTCGGAGACATAAAACTGG 15898
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG-TTCCACGCGCA 6798
| || || ||||||| || || |||||||| || | | | |||| |||||||| |
Sbjct 15897 AACAGCGTTGGGCACGGCGGAAGAACCATCAGA-GGCGCTGCAACGGGATTCCACGCACT 15839
Query 6799 CATCACGATCCTTCTGTCAT-CAGGGTTCCGC--TTCAAGGTGTCGATCACGTACTGCAG 6855
| || |||| ||||| | | | | |||| || | ||||| ||||| | |||||
Sbjct 15838 GACAACCATCCGCCTGTCGTGGATGTTCCCGCTTTTTATCGTGTCAATCACCTTTTGCAG 15779
Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915
||| || | || | || | ||||| | | || || ||||| |||||||| ||
Sbjct 15778 CTGATCGACCCCTTCCCCGGTGTAGTCGGTGTAGCAGTCCTTGTACTCGGCCCCAAAATG 15719
Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959
||||||||||| ||||| || || || | || ||||| ||||
Sbjct 15718 CCTCCACTGGAAGCCGTACACAGGCCCGAGATCCCCCTCGTCCC 15675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448252723135440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |