Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq779 125 6e-24 >seq779 Length=31144 Score = 125 bits (138), Expect = 6e-24 Identities = 237/344 (69%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 |||| ||||| || | || || || ||||| ||||||||||| || |||||||| |||| Sbjct 15675 GGGACGAGGGGGATCTCGGGCCTGTGTACGGCTTCCAGTGGAGGCATTTTGGGGCCGAGT 15734 Query 34446 ATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCG 34505 | || || | | ||||| | || | || | || |||||||| | ||||| | Sbjct 15735 ACAAGGACTGCTACACCGACTACACCGGGGAAGGGGTCGATCAGCTGCAAAAGGTGATTG 15794 Query 34506 ACACCTTGAA--GCGGAACCCTG-ATGACAGAAGGATCGTGATGTGCGCGTGGAA-CCCG 34561 |||| | || |||| | | | | ||||| |||| || | | |||||||| |||| Sbjct 15795 ACACGATAAAAAGCGGGAACATCCACGACAGGCGGATGGTTGTCAGTGCGTGGAATCCCG 15854 Query 34562 AAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG 34621 | | | || |||||||| || || ||||||| || || | ||| || || ||| | Sbjct 15855 TTGCAGCGCC-TCTGATGGTTCTTCCGCCGTGCCCAACGCTGTTCCAGTTTTATGTCTCC 15913 Query 34622 AATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCG 34681 | || ||||| |||| ||| || || || || || ||||| ||| | || || ||| Sbjct 15914 GACAGGAAGCTGAGCTGCGCGCTTTACCAGCGGTCTGGGGACATCGGGCTTGGCGTTCCG 15973 Query 34682 TTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||||||||| ||| | | || |||||||| |||| || Sbjct 15974 TTCAACATTGCGTCCTACTCGATCCTGACGTACATTGTCGCGCA 16017 Score = 125 bits (138), Expect = 6e-24 Identities = 237/344 (69%), Gaps = 5/344 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||| |||||||| || | | ||| |||||||||||||| || || | ||| Sbjct 16017 TGCGCGACAATGTACGTCAGGATCGAGTAGGACGCAATGTTGAACGGAACGCCAAGCCCG 15958 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || || || || ||| |||| ||||| || | | ||| || || ||| Sbjct 15957 ATGTCCCCAGACCGCTGGTAAAGCGCGCAGCTCAGCTTCCTGTCGGAGACATAAAACTGG 15898 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG-TTCCACGCGCA 6798 | || || ||||||| || || |||||||| || | | | |||| |||||||| | Sbjct 15897 AACAGCGTTGGGCACGGCGGAAGAACCATCAGA-GGCGCTGCAACGGGATTCCACGCACT 15839 Query 6799 CATCACGATCCTTCTGTCAT-CAGGGTTCCGC--TTCAAGGTGTCGATCACGTACTGCAG 6855 | || |||| ||||| | | | | |||| || | ||||| ||||| | ||||| Sbjct 15838 GACAACCATCCGCCTGTCGTGGATGTTCCCGCTTTTTATCGTGTCAATCACCTTTTGCAG 15779 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 ||| || | || | || | ||||| | | || || ||||| |||||||| || Sbjct 15778 CTGATCGACCCCTTCCCCGGTGTAGTCGGTGTAGCAGTCCTTGTACTCGGCCCCAAAATG 15719 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 ||||||||||| ||||| || || || | || ||||| |||| Sbjct 15718 CCTCCACTGGAAGCCGTACACAGGCCCGAGATCCCCCTCGTCCC 15675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252723135440