Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 140 8e-28
seq944 136 9e-27
seq1 120 7e-22
>seq1207
Length=23098
Score = 140 bits (154), Expect = 8e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| ||||| | ||||| || || || || || || |||||||| || |||| || ||
Sbjct 18535 ACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGTGT 18594
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|| || || ||||||||||| |||||||| || || || || ||||| || || | |||
Sbjct 18595 TCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCC 18654
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||| |||||||| || ||| || ||| ||||| | || | |||||||| ||
Sbjct 18655 TTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACCTCAAG 18714
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| || || ||||| ||||| | ||||||
Sbjct 18715 CGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756
>seq944
Length=26795
Score = 136 bits (150), Expect = 9e-27
Identities = 160/214 (75%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||| || || || || ||||| ||||| || |||| || || ||||| |||
Sbjct 9426 AGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAGAGTGTTCTTCCGTCT 9485
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || ||||| || || | || || || || || | ||| |||||||||
Sbjct 9486 TCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 9545
Query 211023 TGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
||||| |||||| || || ||||||| || || || |||||||| ||||| ||
Sbjct 9546 TGGAT-TTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCACCTCGAGTGTGATTGT 9604
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || || |||||||| || | |||||||
Sbjct 9605 TTTGCCTGTCAGCGTCTTTACGAAGATCTGCATT 9638
>seq1
Length=85208
Score = 120 bits (132), Expect = 7e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || || || ||||| || |||||||| || || | || || ||||| ||
Sbjct 80281 AGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCC 80340
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || ||||| || || | || ||||| || || | ||| || ||||||
Sbjct 80341 TCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCC 80400
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| ||| || || ||||| | || | || |||||||| |||||||||
Sbjct 80401 TGGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTC 80460
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116
|| || || || ||||| || || | ||||||||
Sbjct 80461 TTCCCTGTCAGTGTCTTGACGAAGATCTGCATTT 80494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159126351226355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |