Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq944 149 1e-30 seq1 107 5e-18 >seq944 Length=26795 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||| ||||||||||| || ||||| ||||| | ||||| || | | ||||| Sbjct 9419 AAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAGAGTGTTCT 9478 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| ||||||||||||||||| || |||| || || || ||||| || || || Sbjct 9479 TCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGGATTCCCTC 9538 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| ||||| ||| ||| |||| ||||||| || || | ||||| || | || Sbjct 9539 CTTGTCCTGGATTTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCACCTCGAGTGT 9598 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || ||||| |||| || |||| ||| | |||||| Sbjct 9599 GATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATT 9638 >seq1 Length=85208 Score = 107 bits (118), Expect = 5e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || || || || || |||| ||||| |||| || ||||| || || Sbjct 80281 AGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCC 80340 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || |||| || ||||| || || || || || ||||| Sbjct 80341 TCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCC 80400 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| ||| ||| || | ||||| | || | | || || || | ||||||||| Sbjct 80401 TGGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTC 80460 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 || || |||| || || | ||| | ||||||| Sbjct 80461 TTCCCTGTCAGTGTCTTGACGAAGATCTGCATTT 80494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192504812638538