Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq779 134 1e-26 seq1675 87.8 1e-12 >seq779 Length=31144 Score = 134 bits (148), Expect = 1e-26 Identities = 306/467 (66%), Gaps = 10/467 (2%) Strand=Plus/Minus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 |||||||| || |||||||| | ||| | |||||| || ||||| ||| Sbjct 16131 GGGAAAGGC-CTTGGCTCCCTTCTGCACTGCTCCTTCAGCGACAAAACATGGTCGGTGTA 16073 Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730 || ||| | || || | ||| |||||||| || | ||| || || || | ||| || Sbjct 16072 GATGTGCGTGTCGCCGATAAAGTGAACAAACTCCCCGGTTTCCAGGCCAGTCAGGTGCGC 16013 Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790 | |||||||| |||| |||||| || ||||| || || || || ||||| ||||| Sbjct 16012 GACAATGTACGTCAGGATCGAGTAGGACGCAATGTTGAACGGAACGCCAAGCCCGATGTC 15953 Query 29791 CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 29850 ||| |||| |||||| ||| ||| |||| | |||| || |||||||| ||| Sbjct 15952 CCCAGACCGCTGGTAAAGCGCGCAGCTCAGCTTCCTGTCGGAGACATAAAACTGGAACAG 15893 Query 29851 GGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGAT 29910 | ||||||| ||||| |||| ||| | | ||| ||||| |||| || | Sbjct 15892 CGTTGGGCACGGCGGAAGAACCATCAGAGGCGCTGCAACGGGATTCCACGCACTGACAAC 15833 Query 29911 GATGCGCCTGTCTTCTGGGTTGTTCCTG------ATGAGGTCCACGGCGTTTTGCAGCTG 29964 || |||||||| | || |||||| | || ||| | | ||||||||||| Sbjct 15832 CATCCGCCTGTCGT---GGATGTTCCCGCTTTTTATCGTGTCAATCACCTTTTGCAGCTG 15776 Query 29965 ATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCT 30024 ||| ||||| ||| | |||||| | | |||||||| Sbjct 15775 ATCGACCCCTTCCCCGGTGTAGTCGGTGTAGCAGTCCTTGTACTCGGCCCCAAAATGCCT 15716 Query 30025 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCT 30071 ||||||||| |||||||| || || || || ||||| ||||||| || Sbjct 15715 CCACTGGAAGCCGTACACAGGCCCGAGATCCCCCTCGTCCCTGTCCT 15669 >seq1675 Length=15499 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/155 (75%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 53522 CACCCAGAGATGGGCGACAAGTTTGC-ATCCTTCACGGCGCAAAAGGGGACATGCGGAGC 53580 || || ||||| || ||||||||| | | | ||||| ||| |||||| ||||| Sbjct 10998 CAGCCCGAGATTGGGGACAAGTTTTCCAGCAGGCACGG-GCAGAAGGGGGTCTGCGGGAT 10940 Query 53581 GGTCCTGACTCAGGAGGACATGCCCTTCGACAAGGA-CGGGGTGGTGCCCG-ACCTCATC 53638 |||||| | |||||||||||||| || ||| || |||||| |||||| || | ||| Sbjct 10939 CGTCCTGCCACAGGAGGACATGCCGTTT-ACAGAGAGCGGGGTC-TGCCCGGACATAATC 10882 Query 53639 ATCAACCCCCACGCCTTTCCCTCCAGGATGACGGT 53673 || ||||| |||| ||| || ||||||||||| || Sbjct 10881 ATGAACCCGCACGGCTTCCCGTCCAGGATGACCGT 10847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406154651153122