Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=85208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 292/449 (65%), Gaps = 2/449 (0%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 |||||||| || | |||| || ||||| | ||| ||||| ||||| || || || | Sbjct 27392 CACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTCAGC 27451 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || |||| | || | ||| || ||||| || || || ||||| | || || ||||| Sbjct 27452 CCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGAGAAGAAG 27511 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGC-TGGCTTTGTCTTT 4726 || || || || || || | || || || | | || | | | | | | |||| || Sbjct 27512 ATCCCCTCGACTGCTGCGATTGCAAC-AAGCCGCACGGGGAAGGTCGTCTCCCTGTCCTT 27570 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||| | | | ||||| || || | ||| ||| |||||| ||| | || || || Sbjct 27571 GATCCACCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGATCGCATT 27630 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | | || || | ||| | || || ||||| || || | ||| |||| Sbjct 27631 GAAAAGCCTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCAATGAGCAAGCTGTACAC 27690 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || || || || || || ||||| || |||||||| || | || || | | Sbjct 27691 CTCGGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAACACCGCGCCTCGGGGAT 27750 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || || || | || || | || | | ||| || ||||| ||||| || ||||| Sbjct 27751 CTGGACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACTATCCCGTCGCTTGCTGC 27810 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGT 4995 |||||| || | |||||| || | ||||| Sbjct 27811 AAAAAAGGCAAGAACATGCGACAGAAAGT 27839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040611540091