Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq779 159 3e-34
seq1675 87.8 1e-12
>seq779
Length=31144
Score = 159 bits (176), Expect = 3e-34
Identities = 324/475 (68%), Gaps = 26/475 (5%)
Strand=Plus/Minus
Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164
|||||||| || |||||||| | ||| |||||||| || || || |||
Sbjct 16131 GGGAAAGGC-CTTGGCTCCCTTCTGCACTGCTCCTTCAGCGACAAAACATGGTCGGTGTA 16073
Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224
|| ||| | ||| || | ||| |||||||| || | ||| || || || | ||| ||
Sbjct 16072 GATGTGCGTGTCGCCGATAAAGTGAACAAACTCCCCGGTTTCCAGGCCAGTCAGGTGCGC 16013
Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284
| |||||||| |||| |||||| || ||||| || || || || ||||| |||||
Sbjct 16012 GACAATGTACGTCAGGATCGAGTAGGACGCAATGTTGAACGGAACGCCAAGCCCGATGTC 15953
Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344
||| |||| |||||| ||| || |||| | ||| || |||||||| | |
Sbjct 15952 CCCAGACCGCTGGTAAAGCGCGCAGCTCAGCTTCCTGTCGGAGACATAAAACTGGAACA- 15894
Query 27345 GGCGT--GGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 27400
|||| ||||||| |||||| |||| ||||| | | ||| ||||| || | |
Sbjct 15893 -GCGTTGGGCACGGCGGAAGAACCATCAGAGGCGCTG--CAACGGGATTCCACGCACTGA 15837
Query 27401 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTG------ATGAGGTCCACGGCGTTTTGCA 27454
| | || |||||||| | || |||||| | || ||| | | |||||||
Sbjct 15836 CAACCATCCGCCTGTCGT---GGATGTTCCCGCTTTTTATCGTGTCAATCACCTTTTGCA 15780
Query 27455 GCTGATCCACCCCCATCCCCGAGTAGTC----TACCCTCATGTCCGTGTACTCTGCTCCG 27510
||||||| ||||| ||| | |||||| || | |||| ||||||| || ||
Sbjct 15779 GCTGATCGACCCCTTCCCCGGTGTAGTCGGTGTAGCA----GTCCTTGTACTCGGCCCCA 15724
Query 27511 AAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCT 27565
||||||||||| ||||| |||||||| || || || || ||||| ||||||| ||
Sbjct 15723 AAATGCCTCCACTGGAAGCCGTACACAGGCCCGAGATCCCCCTCGTCCCTGTCCT 15669
>seq1675
Length=15499
Score = 87.8 bits (96), Expect = 1e-12
Identities = 117/155 (75%), Gaps = 6/155 (4%)
Strand=Plus/Minus
Query 48538 CACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGGGACATGTGGAGC 48596
|| || ||||| || ||||||||| | | ||||| ||| |||||| || ||
Sbjct 10998 CAGCCCGAGATTGGGGACAAGTTTTCCAGCAGGCACGG-GCAGAAGGGGGTCTGCGGGAT 10940
Query 48597 CGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGA-CGGGGTGGTGCCCG-ACCTCATC 48654
||||||| | |||||||||||||| || ||| || |||||| |||||| || | |||
Sbjct 10939 CGTCCTGCCACAGGAGGACATGCCGTTT-ACAGAGAGCGGGGTC-TGCCCGGACATAATC 10882
Query 48655 ATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 48689
|| ||||| |||| ||| || ||||||||||||||
Sbjct 10881 ATGAACCCGCACGGCTTCCCGTCCAGGATGACCGT 10847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369499422681737
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |