Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq779 159 3e-34 seq1675 87.8 1e-12 >seq779 Length=31144 Score = 159 bits (176), Expect = 3e-34 Identities = 324/475 (68%), Gaps = 26/475 (5%) Strand=Plus/Minus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 |||||||| || |||||||| | ||| |||||||| || || || ||| Sbjct 16131 GGGAAAGGC-CTTGGCTCCCTTCTGCACTGCTCCTTCAGCGACAAAACATGGTCGGTGTA 16073 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 || ||| | ||| || | ||| |||||||| || | ||| || || || | ||| || Sbjct 16072 GATGTGCGTGTCGCCGATAAAGTGAACAAACTCCCCGGTTTCCAGGCCAGTCAGGTGCGC 16013 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 | |||||||| |||| |||||| || ||||| || || || || ||||| ||||| Sbjct 16012 GACAATGTACGTCAGGATCGAGTAGGACGCAATGTTGAACGGAACGCCAAGCCCGATGTC 15953 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 ||| |||| |||||| ||| || |||| | ||| || |||||||| | | Sbjct 15952 CCCAGACCGCTGGTAAAGCGCGCAGCTCAGCTTCCTGTCGGAGACATAAAACTGGAACA- 15894 Query 27345 GGCGT--GGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 27400 |||| ||||||| |||||| |||| ||||| | | ||| ||||| || | | Sbjct 15893 -GCGTTGGGCACGGCGGAAGAACCATCAGAGGCGCTG--CAACGGGATTCCACGCACTGA 15837 Query 27401 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTG------ATGAGGTCCACGGCGTTTTGCA 27454 | | || |||||||| | || |||||| | || ||| | | ||||||| Sbjct 15836 CAACCATCCGCCTGTCGT---GGATGTTCCCGCTTTTTATCGTGTCAATCACCTTTTGCA 15780 Query 27455 GCTGATCCACCCCCATCCCCGAGTAGTC----TACCCTCATGTCCGTGTACTCTGCTCCG 27510 ||||||| ||||| ||| | |||||| || | |||| ||||||| || || Sbjct 15779 GCTGATCGACCCCTTCCCCGGTGTAGTCGGTGTAGCA----GTCCTTGTACTCGGCCCCA 15724 Query 27511 AAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCT 27565 ||||||||||| ||||| |||||||| || || || || ||||| ||||||| || Sbjct 15723 AAATGCCTCCACTGGAAGCCGTACACAGGCCCGAGATCCCCCTCGTCCCTGTCCT 15669 >seq1675 Length=15499 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/155 (75%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 48538 CACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGGGACATGTGGAGC 48596 || || ||||| || ||||||||| | | ||||| ||| |||||| || || Sbjct 10998 CAGCCCGAGATTGGGGACAAGTTTTCCAGCAGGCACGG-GCAGAAGGGGGTCTGCGGGAT 10940 Query 48597 CGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGA-CGGGGTGGTGCCCG-ACCTCATC 48654 ||||||| | |||||||||||||| || ||| || |||||| |||||| || | ||| Sbjct 10939 CGTCCTGCCACAGGAGGACATGCCGTTT-ACAGAGAGCGGGGTC-TGCCCGGACATAATC 10882 Query 48655 ATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 48689 || ||||| |||| ||| || |||||||||||||| Sbjct 10881 ATGAACCCGCACGGCTTCCCGTCCAGGATGACCGT 10847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369499422681737