Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq655 100 4e-16
seq1 96.9 5e-15
>seq655
Length=33610
Score = 100 bits (110), Expect = 4e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 76800 GATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAG 76859
|||||||| | || || ||||||||||| || || || || ||| |||| ||||||
Sbjct 28825 GATGCGGGCATCGTTCGCAGATAGTACATGCCGGTCTTCAGCCCCTTCTTCCAGCCGTAG 28884
Query 76860 AAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGA 76919
|| |||||||| ||||| ||||| | || ||||| || | || || | ||||||
Sbjct 28885 AAGTGCATGCTCGTCAGGCGCGAATAGGTTGGCTCGGCAATGTAGATGTTGAGCGACTGG 28944
Query 76920 CTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATT 76979
||||| |||||| | | || | || || ||||| | || ||| |||| || || ||
Sbjct 28945 CTTTGGTCGATGTACGGCCCGCGGTCTGCTGCCATCTGGATGATGTTCTTCTGCGGGATC 29004
Query 76980 TCCCA 76984
|||||
Sbjct 29005 TCCCA 29009
>seq1
Length=85208
Score = 96.9 bits (106), Expect = 5e-15
Identities = 333/518 (64%), Gaps = 6/518 (1%)
Strand=Plus/Plus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || || || || || |||| || || || || || ||||| || || || ||
Sbjct 27434 TCGTTCGAGAAGGTCAGCCCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCA 27493
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302
|| | || || ||||| || || || || || || | ||| ||| | | | | |
Sbjct 27494 AACGCGCCCGAGAAGAAGATCCCCTCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAG 27553
Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359
| | || ||| ||||||| | ||| || ||||||| ||| || | ||
Sbjct 27554 GTCGTCTCCCTGTCCTTGATCCACCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGA 27613
Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419
| |||||| || ||||| || || || || || | | || | | ||| || ||
Sbjct 27614 AGTGTTTCGATCGCATTGAAAAGCCTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCA 27673
Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479
|| | | || |||| |||||||| || || || || ||||| || |||||||||
Sbjct 27674 ATGAGCAAGCTGTACACCTCGGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAA 27733
Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539
|| | ||| || | |||||| |||||| || || || || || ||||| |||
Sbjct 27734 CACCGCGCCTCGGGGATCTGGACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACT 27793
Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599
|| || || || || |||||||| || | ||||| | ||| | | ||||||||
Sbjct 27794 ATCCCGTCGCTTGCTGCAAAAAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCG 27853
Query 48600 GTCAGTTTAT---TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 48656
||||| || | ||||||| || || || | || | || || || |||||
Sbjct 27854 GTCAGCTTCTCCCTCCAGTCGGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAG 27913
Query 48657 AATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694
|| || ||||| | | || ||||| | ||| || ||
Sbjct 27914 AAAGACGCCTCGGACTGCTTGTACATGTCCCAGATGTC 27951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694653803837280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |