Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq655 100 4e-16 seq1 96.9 5e-15 >seq655 Length=33610 Score = 100 bits (110), Expect = 4e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 76800 GATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAG 76859 |||||||| | || || ||||||||||| || || || || ||| |||| |||||| Sbjct 28825 GATGCGGGCATCGTTCGCAGATAGTACATGCCGGTCTTCAGCCCCTTCTTCCAGCCGTAG 28884 Query 76860 AAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGA 76919 || |||||||| ||||| ||||| | || ||||| || | || || | |||||| Sbjct 28885 AAGTGCATGCTCGTCAGGCGCGAATAGGTTGGCTCGGCAATGTAGATGTTGAGCGACTGG 28944 Query 76920 CTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATT 76979 ||||| |||||| | | || | || || ||||| | || ||| |||| || || || Sbjct 28945 CTTTGGTCGATGTACGGCCCGCGGTCTGCTGCCATCTGGATGATGTTCTTCTGCGGGATC 29004 Query 76980 TCCCA 76984 ||||| Sbjct 29005 TCCCA 29009 >seq1 Length=85208 Score = 96.9 bits (106), Expect = 5e-15 Identities = 333/518 (64%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || || |||| || || || || || ||||| || || || || Sbjct 27434 TCGTTCGAGAAGGTCAGCCCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCA 27493 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || | || || ||||| || || || || || || | ||| ||| | | | | | Sbjct 27494 AACGCGCCCGAGAAGAAGATCCCCTCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAG 27553 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | | || ||| ||||||| | ||| || ||||||| ||| || | || Sbjct 27554 GTCGTCTCCCTGTCCTTGATCCACCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGA 27613 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 | |||||| || ||||| || || || || || | | || | | ||| || || Sbjct 27614 AGTGTTTCGATCGCATTGAAAAGCCTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCA 27673 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | | || |||| |||||||| || || || || ||||| || ||||||||| Sbjct 27674 ATGAGCAAGCTGTACACCTCGGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAA 27733 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 || | ||| || | |||||| |||||| || || || || || ||||| ||| Sbjct 27734 CACCGCGCCTCGGGGATCTGGACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACT 27793 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || || || || || |||||||| || | ||||| | ||| | | |||||||| Sbjct 27794 ATCCCGTCGCTTGCTGCAAAAAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCG 27853 Query 48600 GTCAGTTTAT---TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 48656 ||||| || | ||||||| || || || | || | || || || ||||| Sbjct 27854 GTCAGCTTCTCCCTCCAGTCGGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAG 27913 Query 48657 AATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 || || ||||| | | || ||||| | ||| || || Sbjct 27914 AAAGACGCCTCGGACTGCTTGTACATGTCCCAGATGTC 27951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694653803837280