Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 118 2e-21 seq1207 109 1e-18 >seq1 Length=85208 Score = 118 bits (130), Expect = 2e-21 Identities = 162/220 (74%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| |||||||| || || ||||| || ||||||||||| |||| | ||||| || || Sbjct 80280 GAGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTC 80339 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || ||||| || || ||||||||||| | | |||||| || || Sbjct 80340 CTCGAGCTGCTTT--CCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTG 80397 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTA-CG-CT-GTCTGAACTCTCTACTTCAAGAGTA 152066 || || |||||| ||||| | ||| | || || | ||||| || || || || || Sbjct 80398 TCCTGGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAA---TCGACCTCGAGGGTG 80454 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 || || || || || || ||||| ||||||| |||||||| Sbjct 80455 ATCGTCTTCCCTGTCAGTGTCTTGACGAAGATCTGCATTT 80494 >seq1207 Length=23098 Score = 109 bits (120), Expect = 1e-18 Identities = 162/223 (73%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||| || || || || || ||||||||||| || | | |||||| Sbjct 18539 AGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTC 18598 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || || ||||| || ||||| || || | ||||||||||| | |||||||| Sbjct 18599 CCGTCCTCCAGCTGCTTT--CCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCTT 18656 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTA-CG-CT-GTCTGAACTCTCTACTTCAA 152061 | || || || |||||| ||||| | ||| | || || | | || || || |||| Sbjct 18657 CTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGA---GTCAACCTCAA 18713 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || || || |||||||| |||| |||||| Sbjct 18714 GCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153795269190817