Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 127 4e-24 seq944 109 1e-18 seq1207 104 5e-17 >seq1 Length=85208 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || || ||||| | ||| || || |||||||||||||| | Sbjct 80265 ACCACCCCGCAGACGGAGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 80324 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | || ||||| || || || || || || || | | || ||||| || Sbjct 80325 CAGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGG 80384 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||| ||||| ||||| ||||| || || | ||||| | || | | ||||| Sbjct 80385 GATTCCCTCTTTGTCCTGGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGAC 80444 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 ||||| ||||||||||| || |||| ||||| ||||| |||||||||| Sbjct 80445 CTCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGACGAAGATCTGCATTT 80494 >seq944 Length=26795 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| ||||||||||| | || || | || || || || || ||||| || || Sbjct 9446 TTCCTTTTGTATGTTGTAGTCCGAGAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAA 9505 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||| | || || || ||| || ||||||||||| ||||| |||| || || | Sbjct 9506 TATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATTTTTGTCTTGACAGA 9565 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| | || || || || || ||||| ||||| || || || |||| ||||| || Sbjct 9566 GTCGATGGATTCGGATGCATCCACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTAC 9625 Query 283088 GAATATCTGCATT 283100 ||| ||||||||| Sbjct 9626 GAAGATCTGCATT 9638 >seq1207 Length=23098 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| | | || ||||| | ||| ||| || |||||||||||||| | Sbjct 18530 CCGCCACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 18589 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | || ||||| || || || || || || |||| || || ||||| || Sbjct 18590 AGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 18649 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| || || ||||| || |||| ||||| | || | | || || Sbjct 18650 ATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACC 18709 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 18710 TCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046716038605458