Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1207 158 3e-33 seq1 152 1e-31 seq944 147 5e-30 >seq1207 Length=23098 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || ||||| || ||||| || ||||| || | || Sbjct 18753 CAGATCTTTGTGAAGACACTGACCGGAAAGACAATCACGCTTGAGGTTGACTCGGCCGAG 18694 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||||| |||||| ||| || |||||||||||||||||||| ||||||||||| Sbjct 18693 TCGATCGAGTCCGTCAAGGCAAAAATACAGGACAAAGAAGGAATCCCCCCGGACCAGCAG 18634 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||| ||||| ||||| || || || || || || | || || ||| || Sbjct 18633 CGACTGATTTTCGCAGGAAAGCAGCTGGAGGACGGGAGAACACTCTCGGACTACAACATC 18574 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || || ||||||||||||||||| Sbjct 18573 CAGAAGGAATCGACGCTCCATCTTGTTTTGAGACT 18539 >seq1 Length=85208 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || ||||| || ||||||||||||||||| || | || Sbjct 80489 CAGATCTTCGTCAAGACACTGACAGGGAAGACGATCACCCTCGAGGTCGATTCAGCCGAG 80430 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||||| ||||| ||| || ||||||||||| |||||||| || |||||||| Sbjct 80429 TCGATCGAGTCGGTCAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGACCAGCAG 80370 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| ||||| |||||||| || ||||| || || |||| || ||| || Sbjct 80369 AGACTCATTTTCGCGGGAAAGCAGCTCGAGGACGGAAGAACACTGTCCGACTACAACATC 80310 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || |||||||||||| Sbjct 80309 CAGAAGGAGTCGACGCTGCATCTTGTT 80283 >seq944 Length=26795 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || ||||| ||||| ||||| ||||||||||| || || Sbjct 9634 CAGATCTTCGTAAAGACGCTGACAGGCAAAACAATCACACTCGAGGTGGATGCATCCGAA 9575 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||||| ||||| |||||| || |||||||| || |||||||| || || ||||| Sbjct 9574 TCCATCGACTCTGTCAAGACAAAA-ATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCA 9516 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||| || ||||| || || ||||||||||| ||||| || || | || || ||| | Sbjct 9515 GAGACTGATATTCGCTGGGAAGCAGCTCGAAGACGGAAGAACACTCTCGGACTACAACAT 9456 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| ||||| || ||||| || | || ||| Sbjct 9455 ACAAAAGGAATCGACACTCCACCTTGTGCTGCGTCTTAGA 9416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203704564814038