Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1856 98.7 1e-15 seq166 95.1 1e-14 >seq1856 Length=1984 Score = 98.7 bits (108), Expect = 1e-15 Identities = 282/426 (66%), Gaps = 16/426 (4%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || |||||||||||||| || || ||| ||||||||||| ||||||||||||||| Sbjct 1728 TTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTCCATAAAATCAAAAGGATTA 1669 Query 16754 GTAGCTGAA-AATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812 | || ||| |||| | | || || | | | |||| |||||| ||| | | Sbjct 1668 TTTACTTTGTAATGTTTT-GCCAAGCCAAGATTTACCAGTAATACATCCGCAACATACTT 1610 Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGT 16872 | |||||| |||| | | |||||||| | | | ||| ||| | || | Sbjct 1609 AACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAATCTACTTTAAGGGAATCTCT 1550 Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACT-CGTTCCTCGG 16931 | |||| || |||| |||| ||| |||| || | | | | || | | | Sbjct 1549 AACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATT-TCGTAGATACGATTAGCCG 1491 Query 16932 ACGGTGTATGTTTAAGATG----TTTAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987 | | | ||| || | ||| | |||| |||||||| ||||| || | ||| Sbjct 1490 ATGATTTATTTTGCAAATGAGAGTGTAAA----AGACATGCAAAATCAGTGTGGCAACCC 1435 Query 16988 TCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 || ||||| ||||| | ||| ||||||||||| | || |||||| ||||| ||||| Sbjct 1434 TCATCTCT--TGATATTAATTCATTAGAAAATGTAAGACCTGGCATCAATCCTCTTTTCT 1377 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||| |||||| || | || || || | | |||||| || || || || | |||||| | Sbjct 1376 TTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCCTTCTACAGCTGCAAAGG 1317 Query 17106 CGATTA 17111 |||||| Sbjct 1316 CGATTA 1311 >seq166 Length=1757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 281/426 (66%), Gaps = 16/426 (4%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || |||||||||||||| || || ||| ||||||||||| ||||||||||||||| Sbjct 559 TTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTCCATAAAATCAAAAGGATTA 500 Query 16754 GTAGCTGAA-AATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812 | || ||| |||| | | || || | | | |||| |||||| ||| | | Sbjct 499 TTTACTTTGTAATGTTTT-GCCAAGCCAAGATTTACCAGTAATACATCCGCAACATACTT 441 Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGT 16872 | |||||| |||| | | |||||||| | | | ||| ||| | || | Sbjct 440 AACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAATCTACTTTAAGGGAATCTCT 381 Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACT-CGTTCCTCGG 16931 | |||| || |||| |||| ||| |||| || | | | | || | | | Sbjct 380 AACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATT-TCGTAGATACGATTAGCCG 322 Query 16932 ACGGTGTATGTTTAAGATG----TTTAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987 | | | ||| || | ||| | |||| |||||||| ||||| || | ||| Sbjct 321 ATGATTTATTTTGCAAATGAGAGTGTAAA----AGACATGCAAAATCAGTGTGNCAACCC 266 Query 16988 TCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 || || || ||||| | ||| ||||||||||| | || |||||| ||||| ||||| Sbjct 265 TCATCNCT--TGATATTAATTCATTAGAAAATGTAAGACCTGGCATCAATCCTCTTTTCT 208 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||| |||||| || | || || || | | |||||| || || || || | |||||| | Sbjct 207 TTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCCTTCTACAGCTGCAAAGG 148 Query 17106 CGATTA 17111 |||||| Sbjct 147 CGATTA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517491083040360