Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1856 170 2e-37 seq1148 104 3e-17 seq166 98.7 1e-15 seq4813 91.5 2e-13 >seq1856 Length=1984 Score = 170 bits (188), Expect = 2e-37 Identities = 398/593 (67%), Gaps = 13/593 (2%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAG--ACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 |||||| ||||| ||||| | |||||| ||||| |||||||| || ||||| || Sbjct 1459 ACATGCAAAATC--AGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTA 1402 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 || || ||||| | || | || || |||||||| || || ||||| || | | |||| Sbjct 1401 AGACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAG 1342 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATG- 24310 |||||||||||||| || |||||||| || || || || | | || || | | | | Sbjct 1341 AAAATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTA-AAGGGGGAATCTGAAGC 1283 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 || | ||| ||||| |||||||| || | || ||| ||||| | ||||| Sbjct 1282 AATGTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATT 1223 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATAC 24428 ||| || || || || | | ||| ||| | ||||| | ||||| |||| Sbjct 1222 AAATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGA--ATAC 1165 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 || || ||||| || ||| || || ||||| || || || ||| || || | Sbjct 1164 ATCTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGT 1105 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 ||||| || || | ||||| | | || | |||||| | || || || ||| || Sbjct 1104 ATCTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCC 1045 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTC 24605 |||||||| || | ||||||||| ||||||| | |||| ||| | | | || | | Sbjct 1044 GCAAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCC 985 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || ||| |||| || || ||| ||||| || ||||||||| ||| ||||||| Sbjct 984 CATTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCT 925 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 ||||||||| | ||| || | | |||| ||| || || | |||||| || Sbjct 924 AATTTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCT 872 >seq1148 Length=2199 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 53702 AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 53761 || |||||| ||| | |||||||| ||||| ||||| || | | ||| || || Sbjct 619 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCATTCTCACTGGTAAATTCTAAGATT 560 Query 53762 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 53821 || | ||| | ||||| | || || ||||||| |||| |||||| | ||||| ||| Sbjct 559 TCTGCGCATAAGTTACTTCCTTTTATTATTCCTAAGTTTTTTTGATTGTTTTTTTTATTA 500 Query 53822 CACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCT 53881 || || |||||||||||| |||| ||||| || || ||||| | ||| ||||| ||| Sbjct 499 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 440 Query 53882 TTCCA 53886 |||| Sbjct 439 CTCCA 435 >seq166 Length=1757 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 |||||| ||||| ||| |||||| || || |||||||| || ||||| || || Sbjct 290 ACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAG 231 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| | || | || || |||||||| || || ||||| || | | |||||| Sbjct 230 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 171 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289 |||||||||||| || |||||||| || || || || Sbjct 170 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATC 135 >seq4813 Length=2720 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 53702 AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 53761 || |||||| ||| | |||||||| ||||| || || || | | ||| || || Sbjct 2374 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCGTTCTCACTGGTAAATTCTAAGATT 2315 Query 53762 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 53821 || | ||| | ||||| | || | ||||||| |||| ||| || | ||||| ||| Sbjct 2314 TCTGCGCATAAGTTACTTCCTTTTAATATTCCTAAGTTTTTTTGGTTGTTTTTTTTATTA 2255 Query 53822 CACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCT 53881 || || |||||||||||| |||| ||||| || || ||||| | ||| ||||| ||| Sbjct 2254 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 2195 Query 53882 TTCCA 53886 |||| Sbjct 2194 CTCCA 2190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593659058850960