Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4968 212 9e-50 seq932 208 1e-48 seq233 176 7e-39 seq7557 141 1e-28 seq2381 141 1e-28 seq7574 109 8e-19 seq6792 104 4e-17 seq2812 95.1 2e-14 >seq4968 Length=2160 Score = 212 bits (234), Expect = 9e-50 Identities = 288/401 (72%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 202791 TCATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATC-ATGAATACCA 202849 ||||| ||| |||||||||| ||| ||| || ||| | ||| || || ||| Sbjct 55 TCATAGCTCTTATTTTACCAATAATTTCTCTCTCCGCCCAACCCTGATCCATTGAT-CCA 113 Query 202850 CAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTA 202909 ||||| ||||||||| ||| | ||||||||||||||| |||||| ||| |||||||| Sbjct 114 CAAATAGACCACATAATTCCTAGGTATCCATTTGGATCATTTCCATCAATAGAATATTTA 173 Query 202910 TCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtt 202969 ||||| |||| | |||||||||||||| ||| |||||| || | | Sbjct 174 TCATTCAAATAAAATGCTCTTTCCAGTGCTTCTTCTGGTGTTTTGCTCCATTGTAGCAAT 233 Query 202970 tttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTT 203029 |||| |||||||||||||||| ||| |||||||||||||| || | |||||||||| Sbjct 234 GTTTTGGCCCAATACATTCTTACATAACCATGCATTTTACCTGTAATCACCATTTGTTTT 293 Query 203030 TGTGATGCATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATAT 203089 ||| ||||||||| | | ||| ||||| ||||||| | || | |||| |||| Sbjct 294 TGTCCTGCATTCCAATATTCATCAGAAGTTATCCCATTTTCTAATTCACTTAAAGTATAA 353 Query 203090 ATATGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTA-GC 203148 || | | || |||| |||||||| | ||| ||||| | ||| || || | | || Sbjct 354 ATTTTTGCCCTTTTATCCTTTTTATGGACTATTAATGTTTCT-TTGGCCCATGGTAAGGC 412 Query 203149 ACCATTTATATTATCGTAATTTTCATTATAATAACAAAAAT 203189 || | || ||||| ||||||| | || ||||||||||| Sbjct 413 CCCTTCTAAGTTATCATAATTTTTCTCATGATAACAAAAAT 453 >seq932 Length=2997 Score = 208 bits (230), Expect = 1e-48 Identities = 287/401 (72%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 202791 TCATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATC-ATGAATACCA 202849 ||||| ||| |||||||||| ||| ||| || ||| | ||| || || ||| Sbjct 1685 TCATAGCTCTTATTTTACCAATAATTTCTCTCTCCGCCCAACCCTGATCCATTGAT-CCA 1743 Query 202850 CAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTA 202909 ||||| ||||||||| ||| | ||||||||||||||| |||||| || |||| ||| Sbjct 1744 CAAATAGACCACATAATTCCTAGGTATCCATTTGGATCATTTCCATCAATTGAATACTTA 1803 Query 202910 TCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtt 202969 ||||| |||| | |||||||||||||| ||| |||||| || || | Sbjct 1804 TCATTCAAATAAAATGCTCTTTCCAGTGCTTCTTCTGGTGTTTTGCTCCATTGTAGTAAT 1863 Query 202970 tttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTT 203029 |||| |||||||||||||||| ||| |||||||||||||| || | |||||||||| Sbjct 1864 GTTTTGGCCCAATACATTCTTACATAACCATGCATTTTACCTGTAATCACCATTTGTTTT 1923 Query 203030 TGTGATGCATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATAT 203089 ||| ||||||||| | | ||| ||||| ||||||| | || | |||| |||| Sbjct 1924 TGTCCTGCATTCCAATATTCATCAGAAGTTATCCCATTTTCTAATTCACTTAAAGTATAA 1983 Query 203090 ATATGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTA-GC 203148 || | | || |||| |||||||| | ||| ||||| | ||| || || | | || Sbjct 1984 ATTTTTGCCCTTTTATCCTTTTTATGGACTATTAATGTTTCT-TTGGCCCATGGTAAGGC 2042 Query 203149 ACCATTTATATTATCGTAATTTTCATTATAATAACAAAAAT 203189 || | || ||||| ||||||| | || ||||||||||| Sbjct 2043 CCCTTCTAAGTTATCATAATTTTTCTCATGATAACAAAAAT 2083 >seq233 Length=4434 Score = 176 bits (194), Expect = 7e-39 Identities = 296/425 (70%), Gaps = 5/425 (1%) Strand=Plus/Plus Query 205370 TTAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCAT 205429 ||||| || || |||||| ||| |||||||||| ||||| ||| | ||||||| Sbjct 1305 TTAATTGATCAACATGATTGGTATAAATATGTGCATCTGCAATAAAATGTACAAATTCAC 1364 Query 205430 ATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACAT 205489 |||| || || ||| | || || ||||| || || || | ||||||||| | || Sbjct 1365 CAGGTTGTAGATCAGTAAGATAGGCTATCATGTAGGTTAACATGGCATAACTAGCTATAT 1424 Query 205490 TAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATT 205549 |||| |||| |||||| || | |||| ||||||||||||| | ||| | | | || Sbjct 1425 TAAAAGGTATACCTAATCCAACATCACCTGATCTTTGATATAAAGCACAATTCAAAAATC 1484 Query 205550 TATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAA 205609 ||| || |||| ||| || | || |||| || || || | | |||| | || || Sbjct 1485 CATTTGTA---ACATTAAACTGGAATAATAAATGGCATGGAGGCAAAGCCATCTCTTTAA 1541 Query 205610 CATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattt 205669 | ||| |||||||| | | |||| |||| || || ||||| ||||| | Sbjct 1542 GCTGTATTGGATTCCATGAAACAACAATTAATCTTCTGCTATCTGGATTATTCTTTATCT 1601 Query 205670 tatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAAT-TTGTATCCATATCA 205728 ||| |||| || | || ||||||| ||||| ||| | ||| | || | || || Sbjct 1602 CATTAATAACATTTTGCAACTGATCAATTCCTTTATTGGAATAGTCTTCTTCACAGGTC- 1660 Query 205729 ATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCT 205788 |||| ||||||||| |||| ||||||||||| || ||||| ||||||||||| || ||| Sbjct 1661 GTATAATTAGCACCATAATGTCGCCATTGAAAGCCGTAAACAGGACCTAAATCCCCCTCT 1720 Query 205789 TTTCT 205793 |||| Sbjct 1721 CTTCT 1725 >seq7557 Length=3014 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | |||||||| ||||| || || || ||| ||||| | ||| || Sbjct 2557 AATGCAAATCTTTGTCAAGACACTCACAGGAAAGACAATTACTTTAGAGGTAGAACCATC 2498 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| |||||||| || |||||||| |||||||| ||||| Sbjct 2497 AGATACCATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATACCACCAGATCA 2438 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| ||||||||||| || |||||| | || || | ||| | || || || Sbjct 2437 ACAAAGACTTATTTTTGCTGGTAAACAACTTGAAGACGGAAGAAGCCTTTCTGACTACAA 2378 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||| || | ||||||||| || | ||| |||| || Sbjct 2377 CATCCAAAAAGAAAGTACCATTCATTTGGTTCTAAGATTAAGAGGAGG 2330 >seq2381 Length=3349 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | |||||||| ||||| || || || ||| ||||| | ||| || Sbjct 870 AATGCAAATCTTTGTCAAGACACTCACAGGAAAGACAATTACTTTAGAGGTAGAACCATC 811 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| |||||||| || |||||||| |||||||| ||||| Sbjct 810 AGATACCATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATACCACCAGATCA 751 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| ||||||||||| || |||||| | || || | ||| | || || || Sbjct 750 ACAAAGACTTATTTTTGCTGGTAAACAACTTGAAGACGGAAGAAGCCTTTCTGACTACAA 691 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||| || | ||||||||| || | ||| |||| || Sbjct 690 CATCCAAAAAGAAAGTACCCTTCATTTGGTTCTAAGATTAAGAGGAGG 643 >seq7574 Length=465 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | |||||||| ||||| || || || ||| ||||| | ||| || Sbjct 428 AATGCAAATCTTTGTCAAGACACTCACAGGAAAGACAATTACTTTAGAGGTAGAACCATC 369 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| |||||||| || |||||||| |||||||| ||||| Sbjct 368 AGATACCATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATACCACCAGATCA 309 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| ||||| | |||||| | || || | ||| | || || || Sbjct 308 ACAAAGACTTATAAAAAAAAATAAACAACTTGAAGACGGAAGAAGTCTTTCTGACTACAA 249 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||| || | ||||||||| || | ||| |||| || Sbjct 248 CATCCAAAAAGAAAGTACCCTTCATTTGGTTCTAAGATTAAGAGGAGG 201 >seq6792 Length=344 Score = 104 bits (114), Expect = 4e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| ||| || | || |||| || || || | | |||| | || || | ||| ||| Sbjct 31 ACATTAAACTGGAATAATAAATGGCATGGAGGCAAAGCCATCTCTTTAAGCTGTATTGGA 90 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| | | |||| |||| || || ||||| ||||| | ||| |||| | Sbjct 91 TTCCATGAAACAACAATTAATCTTCTGCTATCTGGATTATTCTTTATCTCATTAATAACA 150 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC-CATATCAATATATTTAGC 205739 | | |||||||||| ||||| ||| | ||| | | || || || |||| |||| Sbjct 151 TTTTGCAATTGATCAATTCCTTTATTGGAATAGTCTTCTTCACAGGTCG-TATAACTAGC 209 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCT 205793 |||| |||| ||||||||||| |||||||| ||||||||||| || ||| |||| Sbjct 210 ACCATAATGTCGCCATTGAAAGCCATAAACAGGACCTAAATCCCCCTCTCTTCT 263 >seq2812 Length=2852 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 205370 TTAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCAT 205429 ||||| || || |||||| ||| |||||||||| ||||| ||| | ||||||| Sbjct 2570 TTAATTGATCAACATGATTGGTATAAATATGTGCATCTGCAATAAAATGTACAAATTCAC 2629 Query 205430 ATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACAT 205489 |||| || || ||| | || || ||||| || || || | ||||||||| | || Sbjct 2630 CAGGTTGTAGATCAGTAAGATAGGCTATCATGTAGGTTAACATGGCATAACTAGCTATAT 2689 Query 205490 TAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATA 205529 |||| || | |||||| || | |||| ||||||||||||| Sbjct 2690 TAAAAGGAATACCTAATCCAACATCACCTGATCTTTGATA 2729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755376422153600