Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1856 152 5e-32 seq166 116 3e-21 >seq1856 Length=1984 Score = 152 bits (168), Expect = 5e-32 Identities = 576/894 (64%), Gaps = 40/894 (4%) Strand=Plus/Minus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 |||||| || ||| | || ||||| || || ||||||||| ||| || ||||| || Sbjct 1747 TTGATACTCTGCAACAATNTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 1688 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAA 16065 |||||||||||||||||| ||| || | ||| | | || | | | || ||| Sbjct 1687 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTAA 1628 Query 16066 TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 16125 | |||||| ||| | | | ||| || ||| | | | |||||||| | || | Sbjct 1627 TACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAATC 1568 Query 16126 AAC----AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || ||||| | || | | ||| | || ||||| | ||| ||| | | || | Sbjct 1567 TACTTTAAGGGAAT----CTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGA 1512 Query 16182 TATCTCTTACTACACTATTTAACGGAGGGTTTA--------ATAAGTGTTTAAACATTAT 16233 | || || | || ||| | | || | |||| || || || |||| | Sbjct 1511 TTTCG--TAG-ATACGATT-AGCCGATGATTTATTTTGCAAATGAGAGTGTAAA----AG 1460 Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| ||||||||| || | || || || || |||||| || || ||||||||||| Sbjct 1459 ACATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAG 1400 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 ||||||||| | ||||| ||| || | |||||| |||| ||||| || | | |||||| Sbjct 1399 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 1340 Query 16354 TATACCTTCAACTGCGGCAAATGC----AACCAATCGCTCACCGTACGTTCTAtttttac 16409 || ||||| || || ||||| || | || |||||| | | | || | | Sbjct 1339 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAA----AGGGGGAATCTGAA- 1285 Query 16410 tttctatccattttttagcccaatttg-ctttttgtttAACACAGTTCATGTTCTCTATT 16468 | || ||||| ||||| | | |||||| | | | || | |||| | | Sbjct 1284 --GCAATGTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTT-GAAACT 1228 Query 16469 GCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTA 16528 |||||||||| ||| || |||| ||| ||| | || || || ||| | Sbjct 1227 GCATTAAATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGAA 1168 Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCG 16588 ||||| || ||||| || ||||| ||||| || || |||||| ||| ||||| Sbjct 1167 TACATCTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCT 1108 Query 16589 GATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTA 16648 | ||| || || ||| ||| ||| | || | ||||| |||| || ||||| Sbjct 1107 GGTATCTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGAT 1048 Query 16649 GCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGT-TTT 16705 || |||||||| || |||| ||||||||||||||| |||| | || | || | ||| Sbjct 1047 GCCGCAAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTT 988 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 ||| ||| | ||| | |||||| || || || |||||||| || | | Sbjct 987 TCCCATTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCT 928 Query 16766 GCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATAC 16819 || ||||||||||| |||||| | ||| |||||| |||| |||| || Sbjct 927 GCTAATTTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAAC 874 >seq166 Length=1757 Score = 116 bits (128), Expect = 3e-21 Identities = 294/444 (66%), Gaps = 24/444 (5%) Strand=Plus/Minus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 |||||| || ||| |||| ||||| || || ||||||||| ||| || ||||| || Sbjct 578 TTGATACTCTGCAACCTTCTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 519 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAA 16065 |||||||||||||||||| ||| || | ||| | | || | | | || ||| Sbjct 518 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTAA 459 Query 16066 TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 16125 | |||||| ||| | | | ||| || ||| | | | |||||||| | || | Sbjct 458 TACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAATC 399 Query 16126 AAC----AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || ||||| | || | | ||| | || ||||| | ||| ||| | | || | Sbjct 398 TACTTTAAGGGAAT----CTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGA 343 Query 16182 TATCTCTTACTACACTATTTAACGGAGGGTTTA--------ATAAGTGTTTAAACATTAT 16233 | || || | || ||| | | || | |||| || || || |||| | Sbjct 342 TTTCG--TAG-ATACGATT-AGCCGATGATTTATTTTGCAAATGAGAGTGTAAA----AG 291 Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| ||||||||| || | || || || || |||||| || || ||||||||||| Sbjct 290 ACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAG 231 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 ||||||||| | ||||| ||| || | |||||| |||| ||||| || | | |||||| Sbjct 230 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 171 Query 16354 TATACCTTCAACTGCGGCAAATGC 16377 || ||||| || || ||||| || Sbjct 170 AATTCCTTCTACAGCTGCAAAGGC 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462463280142200