Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq233 140 3e-28 seq2812 93.3 3e-14 seq6792 91.5 1e-13 >seq233 Length=4434 Score = 140 bits (154), Expect = 3e-28 Identities = 288/423 (68%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 20214 AGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGT 20273 |||||||||||| |||||||| || || ||||||||| |||||| ||| ||| | ||| Sbjct 1720 AGAGGGGGATTTAGGTCCTGTTTACGGCTTTCAATGGCGACATTATGGTGCTAATTATAC 1661 Query 20274 TGACATGAACACAA-ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 ||| || | || | |||| ||||| | ||||| || ||||||||||||||| Sbjct 1660 -GACCTGTGAAGAAGACTATTCCAATAAAGGAATTGATCAGTTGCAAAATGTTATTAATG 1602 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 || || | || ||| | ||||||| | ||| | | ||||| | | | | Sbjct 1601 AGATAAAGAATAATCCAGATAGCAGAAGATTAATTGTTGTTTCATGGAATCCAATACA-- 1544 Query 20393 TGCCTTTA---ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATA 20449 || | | ||||||||||||||||| ||| | ||| ||| ||| | || || | Sbjct 1543 -GCTTAAAGAGATGGCTTTGCCTCCATGCCATTTATTATTCCAGTTTAA---TGTTACAA 1488 Query 20450 ATGAATTGTCG---TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTT 20506 ||| ||| | | ||| | |||||| |||| | |||| | ||| | ||| | |||| Sbjct 1487 ATGGATTTTTGAATTGTGCTTTATATCAAAGATCAGGTGATGTTGGATTAGGTATACCTT 1428 Query 20507 TCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAA 20566 | ||||| || |||||||| || | || || ||||| || || |||| ||| || || Sbjct 1427 TTAATATAGCTAGTTATGCCATGTTAACCTACATGATAGCCTATCTTACTGATCTACAAC 1368 Query 20567 CGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTT 20626 | ||||| || || || || | ||| || |||||||| |||||| | || | | Sbjct 1367 CTGGTGAATTTGTACATTTTATTGCAGATGCACATATTTATACCAATCATGTTGATCAAT 1308 Query 20627 TAA 20629 ||| Sbjct 1307 TAA 1305 >seq2812 Length=2852 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||||||||||||||||| ||| ||| ||| ||| | || || |||| ||| | | Sbjct 2798 ATGGCTTTGCCTCCATGCCATTNNTTATTCCAGTTTAA---TGTTACAAATGGATTTTTG 2742 Query 20461 ---TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 | | | |||||| |||| | |||| | ||| | ||| ||||||| ||||| || Sbjct 2741 NATTNTGCTTTATATCAAAGATCAGGTGATGTTGGATTAGGTATTCCTTTTAATATAGCT 2682 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 |||||||| || | || || ||||| || || |||| ||| || || | ||||| || Sbjct 2681 AGTTATGCCATGTTAACCTACATGATAGCCTATCTTACTGATCTACAACCTGGTGAATTT 2622 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAA 20629 || || || | ||| || |||||||| |||||| | || | |||| Sbjct 2621 GTACATTTTATTGCAGATGCACATATTTATACCAATCATGTTGATCAATTAA 2570 >seq6792 Length=344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 20214 AGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGT 20273 |||||||||||| |||||||| ||||| ||||||||| |||||| ||| ||| ||| Sbjct 258 AGAGGGGGATTTAGGTCCTGTTTATGGCTTTCAATGGCGACATTATGGTGCTAGTTAT-A 200 Query 20274 TGACATGAACACAA-ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 ||| || | || | |||| ||||| | |||||||| ||||||||||||||| Sbjct 199 CGACCTGTGAAGAAGACTATTCCAATAAAGGAATTGATCAATTGCAAAATGTTATTAATG 140 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 || || | || ||| | ||||||| | ||| | | ||||| | | | | Sbjct 139 AGATAAAGAATAATCCAGATAGCAGAAGATTAATTGTTGTTTCATGGAATCCAATACA-- 82 Query 20393 TGCCTTTA---ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT 20448 || | | ||||||||||||||||| ||| | ||| ||| ||| | ||| | ||| Sbjct 81 -GCTTAAAGAGATGGCTTTGCCTCCATGCCATTTATTATTCCAGTTTAATGTTACAAAT 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399143002181515