Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1856 181 1e-40 seq166 102 8e-17 >seq1856 Length=1984 Score = 181 bits (200), Expect = 1e-40 Identities = 604/927 (65%), Gaps = 30/927 (3%) Strand=Plus/Minus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| || ||| | || ||||| ||||||||||| ||| | || ||||| || Sbjct 1747 TTGATACTCTGCAACAATNTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 1688 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTA 14033 |||||||||||| ||||| || || | | || | ||| || || | || |||| Sbjct 1687 CATAAAATCAAAAGGATTATTT-ACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTA 1629 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 || |||||||| ||| || |||||| ||||| | | ||||||| || | | | Sbjct 1628 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 1569 Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 ||| || || | | |||||||| ||||| || || | || || Sbjct 1568 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATT- 1510 Query 14154 TCGTAATAATTTCATTAGAAGGAGGAT--ATTTT--AGATG----TTTAAAAATTAAACA 14205 ||||| || ||||| | | ||| ||||| | ||| | ||||| ||| Sbjct 1509 TCGTAG--ATACGATTAGCCG-ATGATTTATTTTGCAAATGAGAGTGTAAAAG----ACA 1457 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||||||| || ||||||||||| || | ||| || |||||||| | || Sbjct 1456 TGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAGACC 1397 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 |||||||||||||| ||| |||| |||||| || | ||| || || | |||||| || Sbjct 1396 TGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAAT 1337 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385 ||| || || || ||||| || |||| | || | ||| | | | | | || | Sbjct 1336 TCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATCTGAAG-CAATGT 1278 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||||| |||||||| | ||||| | | | | |||||| || |||||||| Sbjct 1277 --ATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAAA 1220 Query 14446 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 || | |||||||| || | |||| | |||||||| || |||||| || Sbjct 1219 TAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGAATACATCTC 1160 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 ||| || || |||||||||||| || || |||||| ||| ||||||| || Sbjct 1159 AGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTATCTG 1100 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 ||||| ||||||| | |||| |||||| |||| ||||||||| || ||||| Sbjct 1099 AACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGCAAA 1040 Query 14626 AAATGCCAATATGTTTTTAATAAAGT---ATTGCTCTTCATT---GCTGAGTTTTTTCCA 14679 |||||| | || | ||||||||| | || |||||||| ||| |||| ||| Sbjct 1039 AAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTG---TTTTCCCA 983 Query 14680 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 || ||| || | ||| ||||| ||| ||||||||| | | ||| Sbjct 982 TTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAA 923 Query 14740 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGT 14799 |||||||||| ||||||||| ||| ||||| || | ||||| ||| ||| Sbjct 922 TTTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCTTTCTTCTGT 863 Query 14800 TTCTTTAAGAATTGGTTCCATTTTATT 14826 | |||| ||||| ||| |||||| Sbjct 862 AGGTGTAAGTATTGGGTCCTCTTTATT 836 >seq166 Length=1757 Score = 102 bits (112), Expect = 8e-17 Identities = 295/446 (66%), Gaps = 18/446 (4%) Strand=Plus/Minus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| || ||| | || ||||| ||||||||||| ||| | || ||||| || Sbjct 578 TTGATACTCTGCAACCTTCTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 519 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTA 14033 |||||||||||| ||||| || || | | || | ||| || || | || |||| Sbjct 518 CATAAAATCAAAAGGATTATTT-ACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTA 460 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 || |||||||| ||| || |||||| ||||| | | ||||||| || | | | Sbjct 459 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 400 Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 ||| || || | | |||||||| ||||| || || | || || Sbjct 399 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATT- 341 Query 14154 TCGTAATAATTTCATTAGAAGGAGGAT--ATTTT--AGATG----TTTAAAAATTAAACA 14205 ||||| || ||||| | | ||| ||||| | ||| | ||||| ||| Sbjct 340 TCGTAG--ATACGATTAGCCG-ATGATTTATTTTGCAAATGAGAGTGTAAAAG----ACA 288 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||||||| || |||||||| || || | ||| || |||||||| | || Sbjct 287 TGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAGACC 228 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 |||||||||||||| ||| |||| |||||| || | ||| || || | |||||| || Sbjct 227 TGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAAT 168 Query 14326 TCCCTCAACTGCAGCAAACGCTATTA 14351 ||| || || || ||||| || |||| Sbjct 167 TCCTTCTACAGCTGCAAAGGCGATTA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482294790920360