Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1856 159 4e-34 seq1148 100 4e-16 seq166 95.1 2e-14 seq4813 86.0 8e-12 >seq1856 Length=1984 Score = 159 bits (176), Expect = 4e-34 Identities = 410/619 (66%), Gaps = 9/619 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 |||||| ||||| ||| |||||| ||||| |||||||| |||||||| || || Sbjct 1459 ACATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAG 1400 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| | || | || || |||||||| || ||||| || || | |||||| Sbjct 1399 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 1340 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-TA 33759 ||||||||||| || |||||||| || || || || | | || || | | | | | Sbjct 1339 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTA-AAGGGGGAATCTGAAGCAA 1281 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 | | ||| ||||| |||||||| || | || ||| || ||| | ||||||| Sbjct 1280 TGTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAA 1221 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACAT 33877 | || || || || | | ||| ||| | || || | ||||| |||||| Sbjct 1220 ATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGA--ATACAT 1163 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || ||||| || ||| || || || || || || || ||| || || | || Sbjct 1162 CTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTAT 1103 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | ||||| | | || | |||||| | || || |||||| || || Sbjct 1102 CTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGC 1043 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCA 34054 |||||| || | ||||||||| ||||||| | |||| ||| | | | || | ||| Sbjct 1042 AAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCA 983 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 ||| |||| || || ||| ||||| || ||||||||| ||| ||||||| Sbjct 982 TTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAA 923 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||||||||| | ||| || | | |||| || ||||| | |||||| || | | | Sbjct 922 TTTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCTTTCTTCTGT 863 Query 34175 TGGTGCAAGGATAGGTTCC 34193 |||| ||| || || ||| Sbjct 862 AGGTGTAAGTATTGGGTCC 844 >seq1148 Length=2199 Score = 100 bits (110), Expect = 4e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 62940 AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62999 || |||| | ||| | ||||| || ||||| ||||| || | | ||| || || Sbjct 619 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCATTCTCACTGGTAAATTCTAAGATT 560 Query 63000 TCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63059 || | ||| | ||||| | || || ||||||| |||| |||||| | ||||| ||| Sbjct 559 TCTGCGCATAAGTTACTTCCTTTTATTATTCCTAAGTTTTTTTGATTGTTTTTTTTATTA 500 Query 63060 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63119 || || |||||||||||| |||||||||| || || ||||| | ||| ||||| ||| Sbjct 499 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 440 Query 63120 TTCCA 63124 |||| Sbjct 439 CTCCA 435 >seq166 Length=1757 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 |||||| ||||| ||| |||||| || || |||||||| |||||||| || || Sbjct 290 ACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAG 231 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| | || | || || |||||||| || ||||| || || | |||||| Sbjct 230 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 171 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 ||||||||||| || |||||||| || || || || Sbjct 170 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATC 135 >seq4813 Length=2720 Score = 86.0 bits (94), Expect = 8e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 62940 AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62999 || |||| | ||| | ||||| || ||||| || || || | | ||| || || Sbjct 2374 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCGTTCTCACTGGTAAATTCTAAGATT 2315 Query 63000 TCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63059 || | ||| | ||||| | || | ||||||| |||| ||| || | ||||| ||| Sbjct 2314 TCTGCGCATAAGTTACTTCCTTTTAATATTCCTAAGTTTTTTTGGTTGTTTTTTTTATTA 2255 Query 63060 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63119 || || |||||||||||| |||||||||| || || ||||| | ||| ||||| ||| Sbjct 2254 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 2195 Query 63120 TTCCA 63124 |||| Sbjct 2194 CTCCA 2190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629751256588560