Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1856 201 1e-46 seq1148 156 4e-33 seq166 131 2e-25 seq8103 113 4e-20 seq4813 84.2 2e-11 >seq1856 Length=1984 Score = 201 bits (222), Expect = 1e-46 Identities = 572/867 (66%), Gaps = 29/867 (3%) Strand=Plus/Minus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || ||||| ||||| || ||| || || |||| ||||||||| ||||||||||| | Sbjct 1725 TCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTCCATAAAATCAAAAGGATTATTT 1666 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || ||| | |||| | | || | | | | |||| ||| || || | | | | Sbjct 1665 ACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTAATACATCCGCAACATACTTAACA 1606 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 || || ||||| | | | ||||||| || | | ||| || || | | || | | | Sbjct 1605 TATTGCGACATAAGAGATGAATTCATTCCAAGCAAATCTACTTTAAGGGAATCTCTAACA 1546 Query 11543 AACTCCTTTTCTATATTAACCGC---ATCAATGATTATCGACGTTATAACTTCCTTAGAT 11599 || || | ||||| | ||| || | ||||||| ||| | || | | | ||| Sbjct 1545 AATTCTTCTTCTAATTCAACTGCTGAAGTAATGATT-TCGTAGATACGATTAGCC--GAT 1489 Query 11600 GGTGGATGTAATAAATG----TTTAAACATTAAACACGCAAAATCACAATGTAAACCTTC 11655 | | || | ||||| | |||| | ||| ||||||||| || |||| || Sbjct 1488 GATTTATTTTGCAAATGAGAGTGTAAA----AGACATGCAAAATCAGTGTGGCAACCCTC 1433 Query 11656 GTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttAT 11715 ||||| ||||| ||||||||||||||| | || ||||||||||||| ||| |||| Sbjct 1432 ATCTCTTGATATTAATTCATTAGAAAATGTAAGACCTGGCATCAATCCTCTTTTCTTTAG 1373 Query 11716 CCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTAC 11775 |||||| |||| |||||| || | | |||||| ||||| || ||||||||||| || | Sbjct 1372 CCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCCTTCTACAGCTGCAAAGGCGAT 1313 Query 11776 TACTCTTTCTCCATATACCTTGTTGCT--AGATATCCATTTTCTGGCCCAATCAGCTTTC 11833 || || || | || | | || || || ||||| ||||| || || || Sbjct 1312 TAGCCTATCGC--TAAAGGGGGAATCTGAAGCAATGTATTTTAATGCCCATTCGGCCTTT 1255 Query 11834 TTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTT-TTCTAT--ATTA 11890 || | || |||||| | || ||||||| || | || |||| | | | Sbjct 1254 TTCCTGACTATAGGTATTGTTGAAACTGCATTAAATA---GCCTATTCTTCTCTTCAGAA 1198 Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 || || | || || | ||| |||||| || ||||| || |||||||||| Sbjct 1197 TCAGAAACCAACACTTCAATAAGCAAAGAATACATCTCAGAATGGATTACTTCCATAGCT 1138 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATA-AAATCTTTC 12009 ||||| || ||| || || ||| |||| ||| || || || | ||||||| | Sbjct 1137 ATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTATCTGAACCTC-ACTTGCAAATCTTAC 1079 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 || | ||| || | |||||||||||| | ||||||||||| |||| |||||| || Sbjct 1078 AGCCAGATTTTCCATAACAATACCATCAGATGCCGCAAAAAATGCGAGTACATGTTTAAT 1019 Query 12070 AAAGTATTTTTCGTCTTTAGTTAAT---TTATCCCAATCATCTAAATCTTTTGATAAATC 12126 ||| | | |||| |||| | | ||| || ||||| ||| ||| | |||||| Sbjct 1018 AAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCATTCAAACTTATCAACAGTTAAATC 959 Query 12127 TACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATG 12186 ||||| ||| |||||||| | || ||| | ||||||||||| ||| || | | Sbjct 958 AACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAATTTATACATTTCCCATATTTTGGG 899 Query 12187 ATACTTAATAGGGAAAATAACGAACCT 12213 || ||||||||||| | ||| ||||| Sbjct 898 GTATTTAATAGGGAACAAAACAAACCT 872 >seq1148 Length=2199 Score = 156 bits (172), Expect = 4e-33 Identities = 556/851 (65%), Gaps = 31/851 (4%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| || || |||| | ||| | || ||| || | ||||||||||| || Sbjct 1591 TCAACTGTAAACTTAATAGCAGATGACTTAGGTTGTGTCCTTAGGTAATACATTCCTGTC 1532 Query 36850 TTTAGCCCCAATCT-CCATCCGTAAAAATGCATACTGGTCAGTT-TTGCGTATGTAGGAT 36907 |||| ||| | ||| ||| || || ||||||||||| || || | |||| | ||| ||| Sbjct 1531 TTTAACCC-ATTCTTCCAACCATAGAAATGCATACTAGTAAGCTGTTGCAT-TGTTGGAC 1474 Query 36908 TATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967 || ||| | || | | || ||| | ||||| ||||| | ||||| | ||| | Sbjct 1473 TACTCATAAAAATATTTAAGGACTGAGTCTGATCAATAAATGGTCCTCTACCAACTGATA 1414 Query 36968 TTTCTAAAATAC-----ATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTAT 37022 || | ||||| ||||| ||| |||||| || |||||||| || | |||| Sbjct 1413 AATCAATAATACTCTTCATTTT----ATA-CTCCCATACTGTTTTATAAATGTCCCTTAT 1359 Query 37023 ATTATCTGGTAA-ATCTAAATGTT--GAATAGAACCATTATG-TAACACAATTGTATTCT 37078 | | |||| || ||||| ||||||| || | || | | |||| ||| | Sbjct 1358 TTCTTTAGGTATTATGGGTATGTTTTGAATAGATCCTTCATTCTGAATCAATAA-ATTTT 1300 Query 37079 TTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAA 37138 | || || || ||||||| ||| ||||| || |||||| ||| ||| | | Sbjct 1299 TGATTTCTTTGTTCCACAATCCTCTTTCTATTAAATCCTTCAATAAATGTTTATTAATTA 1240 Query 37139 CCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGG 37198 ||||| | ||||||| ||| || |||||| || || || |||| ||||||||||| Sbjct 1239 CCTGATATTCTCCAGCCAATGTTCGTCTTGTGTAAATGTTAGAAGTAAATGGTTCAATGC 1180 Query 37199 ACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGC 37258 | |||||| | | |||||| || |||| || || ||||| || ||| | Sbjct 1179 ATTCATTAAACCCAAGTATTTGTGAGGTAGTAGCTGTTGGCATACAAGCAGTTAACAAAG 1120 Query 37259 TATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAAT--C 37316 ||| || | ||||||| || | ||| | ||| | || | |||||| ||||| Sbjct 1119 AATTCCTTACTCCATGTTTAATGATTTTATTTCTAAGAGACTCCCAATC---TAAATGAT 1063 Query 37317 TGTTGGGTT---CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATC 37373 | | |||| | || |||||||||| |||| | |||||| || || | Sbjct 1062 TACTAGGTTTAACATT--CCACATATCAAATTGAAATTCTCCTTTAGAAATAGGTGATCC 1005 Query 37374 GTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433 | | | | ||||| ||| | | |||| | | | ||| ||||| ||| || Sbjct 1004 TTCAAAAGATGAATAAGCTCCTTCTTCTATAGCCAATAGGTTACTCTCTTCTAATGCTGC 945 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493 ||| || || ||| || || | | ||||||||||||| ||||| ||| ||| |||| Sbjct 944 ATAGTAAATACATTCAAAGATATTTCTATTTAATATTTTAGCTTCCTCGGAATCAAATG- 886 Query 37494 ATAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 ||| || || ||| | |||||| || || || || || ||||| |||||||||| Sbjct 885 ATATTTTAAGCATGGCAAATAAATCAGCTAAGCCTTGTACTCCAATACCAATGGGTCTAT 826 Query 37553 GTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTAT 37612 | || | || || | ||| | || || ||| ||||| ||| |||||||| | Sbjct 825 GCTTAATGTTGCTACTTTTTGCTTCAACTACAGGGTAAAAATTGTAATCAATTATTTTGT 766 Query 37613 TTAGATTTTTA 37623 ||| |||| || Sbjct 765 TTAAATTTCTA 755 Score = 122 bits (134), Expect = 8e-23 Identities = 366/552 (66%), Gaps = 18/552 (3%) Strand=Plus/Minus Query 37695 AATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754 |||| | ||| ||||| || || ||||||| || | |||||| || || |||| Sbjct 614 AATACTTGCTAAGTTACAAACTGCTACTTCATTCTCACTGGTAAATTCTAAGATTTCTGC 555 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 || | ||||| | | ||| |||| || || |||||||| |||||||||||| Sbjct 554 GCATAAGTTACTTCCTTTTATTATTCCTAAGTTTTTTTGATTGTTTTTTTTATTACAGCT 495 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 |||||||| || || || || || ||| ||||| || || || ||||| | | |||| Sbjct 494 GTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCTCTCCA 435 Query 37875 TAAACTTCT-TGCT-TTAACGATCGCTTTAAttt-ttttCTTTGTTTCGTATTCTATATA 37931 | || |||| ||| || | | || ||| ||||||| | || |||| ||| Sbjct 434 T-AATTTCTGGGCTGGTATTCTTTTCCATACTTTATTTTCTT--TCTCATATTTCTCATA 378 Query 37932 TAATTTGTTAAAATCATTCCCCCATACATCGCATAATCC---TG-GACATTCGCATGGAC 37987 ||| || | ||| |||| || | || || | ||||| || | ||| ||||| Sbjct 377 TAAATTATCAAATTCATCACCATAAACCTCAGACAATCCCTTTGCAATATT----TGGAC 322 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 | | || | |||| ||||||| || ||| || | ||| ||||||||||| ||||| | Sbjct 321 AGAATAAACACCAATCTTCATTTTCTTCCACCTTCTTCATGAATAAATCAGGAACCCAAA 262 Query 38048 ATGCAGTAAATAAATCTT-TGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTT 38106 ||| ||||| || ||| | |||| ||||| || ||| || |||||||| Sbjct 261 GTGCTGTAAA-AATGCTTCTACTTCTCATCTCTTCTTTTCCTGTGTTTTTTCTTAAATCN 203 Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166 | ||| || | ||| || | |||||||| || | ||| | |||| | | |||| Sbjct 202 AAAAANTCAAGTATTTCTGGATGCCATGGCTCAAGGAAAAATGCTATTGATGAAGCTCTT 143 Query 38167 TTATCACCTCCCTGATTAATATATCTA-ACTGTGTTATTATATATTCTTAACATAGGTAC 38225 || | || | || |||| || || || || | | | ||| | ||| |||||| | Sbjct 142 TTGTTTCCACANTGTGAAATAAATTTAGACATTGCT-TCAAATACTTTTATCATAGGAAT 84 Query 38226 TATACCATTAGA 38237 ||||||||| || Sbjct 83 TATACCATTGGA 72 >seq166 Length=1757 Score = 131 bits (144), Expect = 2e-25 Identities = 281/417 (67%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || ||||| ||||| || ||| || || |||| ||||||||| ||||||||||| | Sbjct 556 TCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTCCATAAAATCAAAAGGATTATTT 497 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || ||| | |||| | | || | | | | |||| ||| || || | | | | Sbjct 496 ACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTAATACATCCGCAACATACTTAACA 437 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 || || ||||| | | | ||||||| || | | ||| || || | | || | | | Sbjct 436 TATTGCGACATAAGAGATGAATTCATTCCAAGCAAATCTACTTTAAGGGAATCTCTAACA 377 Query 11543 AACTCCTTTTCTATATTAACCGC---ATCAATGATTATCGACGTTATAACTTCCTTAGAT 11599 || || | ||||| | ||| || | ||||||| ||| | || | | | ||| Sbjct 376 AATTCTTCTTCTAATTCAACTGCTGAAGTAATGATT-TCGTAGATACGATTAGCC--GAT 320 Query 11600 GGTGGATGTAATAAATG----TTTAAACATTAAACACGCAAAATCACAATGTAAACCTTC 11655 | | || | ||||| | |||| | ||| ||||||||| || |||| || Sbjct 319 GATTTATTTTGCAAATGAGAGTGTAAA----AGACATGCAAAATCAGTGTGNCAACCCTC 264 Query 11656 GTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttAT 11715 || || ||||| ||||||||||||||| | || ||||||||||||| ||| |||| Sbjct 263 ATCNCTTGATATTAATTCATTAGAAAATGTAAGACCTGGCATCAATCCTCTTTTCTTTAG 204 Query 11716 CCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGC 11772 |||||| |||| |||||| || | | |||||| ||||| || ||||||||||| || Sbjct 203 CCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCCTTCTACAGCTGCAAAGGC 147 >seq8103 Length=650 Score = 113 bits (124), Expect = 4e-20 Identities = 278/417 (67%), Gaps = 15/417 (4%) Strand=Plus/Minus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || ||||| ||||| || ||| || || |||| ||||||||| ||||||||||| | Sbjct 437 TCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTCCATAAAATCAAAAGGATTATTT 378 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || ||| | |||| | | || | | | | |||| ||| || || | | | | Sbjct 377 ACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTAATACATCCGCAACATACTTAACA 318 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 || || ||||| | | | ||||||| || | | ||| || || | | || | | | Sbjct 317 TATTGCGACATAAGAGATGAATTCATTCCAAGCAAATCTACTTTAAGGGAATCTCTAACA 258 Query 11543 AACTCCTTTTCTATATTAACCGC---ATCAATGATTATCGACGTTATAACTTCCTTAGAT 11599 || || | ||||| | ||| || | ||||||| ||| | || | | | ||| Sbjct 257 AATTCTTCTTCTAATTCAACTGCTGAAGTAATGATT-TCGTAGATACGATTAGCC--GAT 201 Query 11600 GGTGGATGTAATAAATG----TTTAAACATTAAACACGCAAAATCACAATGTAAACCTTC 11655 | | || | ||||| | |||| | ||| ||||||||| || | ||| | Sbjct 200 GATTTATTTTGCAAATGAGAGTGTAAA----AGACATGCAAAATCAGTGTGGCACCCT-C 146 Query 11656 GTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttAT 11715 ||||| ||||| | ||||||||||||| | || ||||||||||||| ||| |||| Sbjct 145 ATCTCTTGATATTAATACATTAGAAAATGTAAGACCTGGCATCAATCCTCTTTTCTTTAG 86 Query 11716 CCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGC 11772 |||||| |||| |||||| || | | ||| || |||| || ||||||||||| || Sbjct 85 CCAAAAAATAGAAGCAAAGGAGCTACTAAAAAAGGTTCCTTCTACAGCTGCAAAGGC 29 >seq4813 Length=2720 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 37422 TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTC 37481 ||||| ||| ||||| || || ||| || || | | ||||||||||||| ||||| || Sbjct 2711 TTCTAATGCTGCATAGTAAATACATTCAAATATATTTCTATTTAATATTTTAGCTTCCTC 2652 Query 37482 GCTATCGAATGCATAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAACACCGATAC 37540 | ||| |||| ||| || || ||| | |||||| || || || || || |||| Sbjct 2651 GGAATCAAATG-ATATTTTAAGCATGGCAAATAAATCAGCTAAGCCTTGTACTCCAATAC 2593 Query 37541 CTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATAT 37600 | ||||||||||| || | || || | ||| | || || ||| ||||| || Sbjct 2592 CAATGGGTCTATGCTTAATGTTGCTACTTTTTGCTTCAACTACAGGGTAAAAATTGTAAT 2533 Query 37601 CTATTATTTTATTTAGATTTTTA 37623 | |||||||| |||| |||| || Sbjct 2532 CAATTATTTTGTTTAAATTTCTA 2510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468475446768880