Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1856 141 1e-28 seq1148 107 3e-18 seq4813 98.7 1e-15 seq166 86.0 9e-12 >seq1856 Length=1984 Score = 141 bits (156), Expect = 1e-28 Identities = 406/619 (66%), Gaps = 9/619 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 |||||| ||||| ||| |||||| ||||| |||| ||| || ||||| || || Sbjct 1459 ACATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAG 1400 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| | || | || || |||||||| || || ||||| || | | |||||| Sbjct 1399 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 1340 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATG-TA 50137 ||||||||||| || |||||||| | || || || | | || || | | | | | Sbjct 1339 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTA-AAGGGGGAATCTGAAGCAA 1281 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 | | ||| ||||| |||||||| || | || ||| || ||| | ||||||| Sbjct 1280 TGTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAA 1221 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACAT 50255 | || || || || | | ||| ||| | || || | ||||| |||||| Sbjct 1220 ATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGA--ATACAT 1163 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || ||||| || ||| || || || || || || || ||| || || | || Sbjct 1162 CTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTAT 1103 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| || || | ||||| | |||| | |||||| | || || || ||| || || Sbjct 1102 CTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGC 1043 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT---TTATTCCA 50432 |||||| || | ||||||||| ||||||| | |||| | | | | || | ||| Sbjct 1042 AAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCA 983 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| |||| || || ||| ||||| || ||||||||| ||| ||||||| Sbjct 982 TTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAA 923 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||||||||| | ||| || | | |||| || ||||| | |||||| || | | | Sbjct 922 TTTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCTTTCTTCTGT 863 Query 50553 TGGTGCAAGGATCGGTTCC 50571 |||| ||| || || ||| Sbjct 862 AGGTGTAAGTATTGGGTCC 844 >seq1148 Length=2199 Score = 107 bits (118), Expect = 3e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 79630 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTA 79689 |||||||| ||||| ||||| || | | ||| || ||||| | ||| | |||||| Sbjct 601 TTACAAACTGCTACTTCATTCTCACTGGTAAATTCTAAGATTTCTGCGCATAAGTTACTT 542 Query 79690 CACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 79749 | || || ||||||| |||| |||||| | ||||| ||||| || ||||||||| Sbjct 541 CCTTTTATTATTCCTAAGTTTTTTTGATTGTTTTTTTTATTACAGCTGTCTTTATAAAGA 482 Query 79750 ATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 ||| | |||||||| || || ||||| | ||| ||||| ||| |||| Sbjct 481 ATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCTCTCCA 435 >seq4813 Length=2720 Score = 98.7 bits (108), Expect = 1e-15 Identities = 447/701 (64%), Gaps = 15/701 (2%) Strand=Plus/Minus Query 79630 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTA 79689 |||||||| ||||| || || || | | ||| || ||||| | ||| | |||||| Sbjct 2356 TTACAAACTGCTACTTCGTTCTCACTGGTAAATTCTAAGATTTCTGCGCATAAGTTACTT 2297 Query 79690 CACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 79749 | || | ||||||| |||| ||| || | ||||| ||||| || ||||||||| Sbjct 2296 CCTTTTAATATTCCTAAGTTTTTTTGGTTGTTTTTTTTATTACAGCTGTCTTTATAAAGA 2237 Query 79750 ATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 79809 ||| | |||||||| || || ||||| | ||| ||||| ||| |||| | | || Sbjct 2236 ATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCTCTCCATAATTTCTGGGCT 2177 Query 79810 TTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCG 79869 |||| | | | | |||||| | || |||| |||||| || || || Sbjct 2176 GGTATTCTTTTCCATACTTTATTTTCTTTCTCATATTTCTCATATAAATTATCAAATTCA 2117 Query 79870 TCTCCCCAAACATC-GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCC 79928 || || |||| || | | | || || | | ||||| | || |||| ||| | Sbjct 2116 TCACCATAAACCTCAGACAATCCCTTTGCAAT-ATTTGGACAGAATAAACACCAATCTTC 2058 Query 79929 ATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 79988 || || | || ||||| || | |||||||| |||||| ||| |||| | ||| Sbjct 2057 ATTTTCTTCCACCTTCTTCATGAATAAATCAGGAACCCAAAGTGCTGTAAAAATGNTTCT 1998 Query 79989 GGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 80048 |||| ||| || |||||||| || ||| | | ||| | || | | || || | Sbjct 1997 ACTTCTCATCTCTTCTTTTCCTGTGTTTTTTCTTAAATCTAAAAATTCAAGTATTTCTGG 1938 Query 80049 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTAT 80108 |||||| || || | | | | || || | | || ||||||||| | || || Sbjct 1937 ATGCCATGGCTCAAGGAAAAATGCTATTGATGAAGCTCTTTTGTTTCCACATTGTGAAAT 1878 Query 80109 GTATCTAG-CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 80167 || ||| | || | | | | ||| | | ||| ||||| ||||||||||| || || Sbjct 1877 AAATTTAGACATTGCT-TCAAATACTTTTATCATAGGAATTATACCATTGGACGTTCC-- 1821 Query 80168 TGGTCCCGGAGATATAG--CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 80225 ||| | || | | || ||||| | |||| | ||| | ||| ||||| Sbjct 1820 ---TCCTGTTGAAAGGGGAGAGCCTCTGGCTCTGATATGAGAAATATTCACACCAATTCC 1764 Query 80226 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCT 80285 ||||||||||||| || || ||| | ||| |||||| | || || | |||| Sbjct 1763 TCCTGCCATTTTAGCTATGTGTGTACATTGCGTTAGTGTATCAAAAATTCC--TTTTGCT 1706 Query 80286 --ATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG 80324 |||||| | || | || |||||||| ||| ||| || Sbjct 1705 GAATCATCCTTAATTGTGAGAAGAAAACAACTACTCATCTG 1665 >seq166 Length=1757 Score = 86.0 bits (94), Expect = 9e-12 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 |||||| ||||| ||| |||||| || || |||| ||| || ||||| || || Sbjct 290 ACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAG 231 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| | || | || || |||||||| || || ||||| || | | |||||| Sbjct 230 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 171 Query 50079 GATTCCTTCTACTGCGGCAAAGGC 50102 ||||||||||| || |||||||| Sbjct 170 AATTCCTTCTACAGCTGCAAAGGC 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718193139360280