Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1856 187 2e-42 seq166 114 1e-20 >seq1856 Length=1984 Score = 187 bits (206), Expect = 2e-42 Identities = 566/859 (66%), Gaps = 28/859 (3%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| || ||| | || ||||| ||||||||||| ||| | || ||||| || Sbjct 1747 TTGATACTCTGCAACAATNTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 1688 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTA 13701 |||||||||||| ||||| ||| || | | || | ||| || || | || |||| Sbjct 1687 CATAAAATCAAAAGGATT-ATTTACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTA 1629 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 || ||| |||| | ||| || |||||| ||||| | | ||||||| || | | | Sbjct 1628 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 1569 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 ||| || || | | |||||||| ||||| | || | || |||| | Sbjct 1568 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTA---ATTCAACTGCTGAAGTAATGA 1512 Query 13822 TTGTAATA-ATCTCATTAGAAGGAGGAT--ATTTT--AGATG----TTTAAAAATTAAAC 13872 || | || || ||||| | | ||| ||||| | ||| | ||||| || Sbjct 1511 TT-TCGTAGATACGATTAGCCG-ATGATTTATTTTGCAAATGAGAGTGTAAAAG----AC 1458 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | ||||||||| || ||||||||||| || | ||| || |||||||| | | Sbjct 1457 ATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAGAC 1398 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 ||||||||||||||| ||| |||| |||||| || | |||||| || | |||||| | Sbjct 1397 CTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAA 1338 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14052 |||| || || || ||||| || |||| | || | ||| | | | | | || Sbjct 1337 TTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATCTGAAG-CAATG 1279 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 | ||||| |||||||| | ||||| | | | | |||||| || ||||||| Sbjct 1278 T--ATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAA 1221 Query 14113 ATAAA-TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 ||| ||||| ||||||| || | |||| | |||||||| || |||||| Sbjct 1220 ATAGCCTATTC-TTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGAATACATC 1162 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||||| || || |||||||||||| || || |||||| ||| ||||| | Sbjct 1161 TCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTATC 1102 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || || || ||||||| | |||| |||||| |||| ||||||||| || ||| Sbjct 1101 TGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGCA 1042 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGT---ATTGCTCTTCATTGTTGAGTTTTTTCCAA 14348 |||||||| | || | ||||||||| | || |||||||| |||| ||| Sbjct 1041 AAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCAT 982 Query 14349 TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14408 || | ||| || | ||| ||||| ||| ||||||||| | | ||| | Sbjct 981 TCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAAT 922 Query 14409 TTATACATTACCCATATTT 14427 ||||||||| ||||||||| Sbjct 921 TTATACATTTCCCATATTT 903 >seq166 Length=1757 Score = 114 bits (126), Expect = 1e-20 Identities = 299/447 (67%), Gaps = 20/447 (4%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| || ||| | || ||||| ||||||||||| ||| | || ||||| || Sbjct 578 TTGATACTCTGCAACCTTCTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 519 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTA 13701 |||||||||||| ||||| ||| || | | || | ||| || || | || |||| Sbjct 518 CATAAAATCAAAAGGATT-ATTTACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTA 460 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 || ||| |||| | ||| || |||||| ||||| | | ||||||| || | | | Sbjct 459 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 400 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 ||| || || | | |||||||| ||||| | || | || |||| | Sbjct 399 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTA---ATTCAACTGCTGAAGTAATGA 343 Query 13822 TTGTAATA-ATCTCATTAGAAGGAGGAT--ATTTT--AGATG----TTTAAAAATTAAAC 13872 || | || || ||||| | | ||| ||||| | ||| | ||||| || Sbjct 342 TT-TCGTAGATACGATTAGCCG-ATGATTTATTTTGCAAATGAGAGTGTAAAAG----AC 289 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | ||||||||| || |||||||| || || | ||| || |||||||| | | Sbjct 288 ATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAGAC 229 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 ||||||||||||||| ||| |||| |||||| || | |||||| || | |||||| | Sbjct 228 CTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAA 169 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTA 14019 |||| || || || ||||| || |||| Sbjct 168 TTCCTTCTACAGCTGCAAAGGCGATTA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479677466651800