Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1856 168 6e-37 seq166 98.7 1e-15 >seq1856 Length=1984 Score = 168 bits (186), Expect = 6e-37 Identities = 599/925 (65%), Gaps = 26/925 (3%) Strand=Plus/Minus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| || ||| | || ||||||||||||||||| ||| | || ||||| || Sbjct 1747 TTGATACTCTGCAACAATNTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 1688 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAATA 13489 ||||||||| || ||||| || || | | || | ||| || || | || | || Sbjct 1687 CATAAAATCAAAAGGATTATTT-ACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTA 1629 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 || ||| |||| | ||| || |||||| ||||| | | ||||||| || | | | Sbjct 1628 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 1569 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||| || || | | |||||||| ||||| | || | | |||| | Sbjct 1568 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTA---ATTCAACTGCTGAAGTAATGA 1512 Query 13610 TCTTAATA-ATGTCATTAGAAGGAGGAT--ATTTT--AGATG----TTTAAAAATTAAAC 13660 | || || || ||||| | | ||| ||||| | ||| | ||||| || Sbjct 1511 T-TTCGTAGATACGATTAGCCG-ATGATTTATTTTGCAAATGAGAGTGTAAAAG----AC 1458 Query 13661 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13720 | ||||||||| || ||||||||||| || | ||| || |||||||| | | Sbjct 1457 ATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAGAC 1398 Query 13721 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 13780 ||||||||||||||| ||| |||| |||||| || | ||| || || | |||||| | Sbjct 1397 CTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAA 1338 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA 13840 |||| || || || ||||| || ||||| | || | ||| | | | | | | Sbjct 1337 TTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATCT---GAAGCAA 1281 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 | ||||| |||||||| | ||||| | | | | |||||| | |||||| | Sbjct 1280 TGTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAA 1221 Query 13901 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 ||| | |||||||| || | |||| | |||||||| || |||||| | Sbjct 1220 ATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGAATACATCT 1161 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020 |||| || || ||| |||||||| || || |||||| ||| ||||||| | Sbjct 1160 CAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTATCT 1101 Query 14021 GTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAA 14080 | ||||| ||||||| | |||| ||||| |||||||||||||| || |||| Sbjct 1100 GAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGCAA 1041 Query 14081 AAAATGCCAATATGTTTTTAATAAAGT---ATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 ||||||| | || | ||||||||| | || |||||||| |||| ||| | Sbjct 1040 AAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCATT 981 Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 | ||| || | ||| ||||| ||| ||||||||| | | ||| || Sbjct 980 CAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAATT 921 Query 14198 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTTT 14257 |||||||| ||||||||| ||| ||||| || | ||||| ||| ||| Sbjct 920 TATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCTTTCTTCTGTAG 861 Query 14258 CTTTAAGAATTGGCTCCATTTTATT 14282 | |||| ||||| ||| |||||| Sbjct 860 GTGTAAGTATTGGGTCCTCTTTATT 836 >seq166 Length=1757 Score = 98.7 bits (108), Expect = 1e-15 Identities = 296/448 (66%), Gaps = 20/448 (4%) Strand=Plus/Minus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| || ||| | || ||||||||||||||||| ||| | || ||||| || Sbjct 578 TTGATACTCTGCAACCTTCTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 519 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAATA 13489 ||||||||| || ||||| || || | | || | ||| || || | || | || Sbjct 518 CATAAAATCAAAAGGATTATTT-ACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTA 460 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 || ||| |||| | ||| || |||||| ||||| | | ||||||| || | | | Sbjct 459 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 400 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||| || || | | |||||||| ||||| | || | | |||| | Sbjct 399 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTA---ATTCAACTGCTGAAGTAATGA 343 Query 13610 TCTTAATA-ATGTCATTAGAAGGAGGAT--ATTTT--AGATG----TTTAAAAATTAAAC 13660 | || || || ||||| | | ||| ||||| | ||| | ||||| || Sbjct 342 T-TTCGTAGATACGATTAGCCG-ATGATTTATTTTGCAAATGAGAGTGTAAAAG----AC 289 Query 13661 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13720 | ||||||||| || |||||||| || || | ||| || |||||||| | | Sbjct 288 ATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAGAC 229 Query 13721 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 13780 ||||||||||||||| ||| |||| |||||| || | ||| || || | |||||| | Sbjct 228 CTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAA 169 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAG 13808 |||| || || || ||||| || ||||| Sbjct 168 TTCCTTCTACAGCTGCAAAGGCGATTAG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478538386652280