Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1856 165 1e-35 seq1148 107 3e-18 seq166 104 3e-17 seq8103 96.9 5e-15 seq4813 93.3 6e-14 >seq1856 Length=1984 Score = 165 bits (182), Expect = 1e-35 Identities = 411/619 (66%), Gaps = 9/619 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 |||||| ||||| ||| |||||||||||| |||||||| || ||||| || || Sbjct 1459 ACATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAG 1400 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| | || | || || |||||||| ||||| ||||| || | | |||||| Sbjct 1399 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 1340 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG-TA 42242 ||||||||||| || |||||||| || || || || | | || || | | | | | | Sbjct 1339 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTA-AAGGGGGAATCTGAAGCAA 1281 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 | | ||| ||||| |||||||| || | || ||| || ||| | ||||||| Sbjct 1280 TGTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAA 1221 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACAT 42360 | || || || || | | ||| ||| | || || | ||||| |||||| Sbjct 1220 ATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGA--ATACAT 1163 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || ||||| || ||| || || || || || || || ||| || || | | Sbjct 1162 CTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTAT 1103 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||| || || | ||||| | |||| | |||||| | || || || ||| || || Sbjct 1102 CTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGC 1043 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT---TTATTCCA 42537 |||||| || | ||||||||| ||||||| | |||| || | ||| || | ||| Sbjct 1042 AAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCA 983 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 ||| |||| || || ||| ||||| || |||||||| ||| | ||||| Sbjct 982 TTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAA 923 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||||||||| | ||| || | | |||| ||| ||||| | |||||| || | | | Sbjct 922 TTTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCTTTCTTCTGT 863 Query 42658 TGGTGCAAGGATCGGTTCC 42676 |||| ||| || || ||| Sbjct 862 AGGTGTAAGTATTGGGTCC 844 >seq1148 Length=2199 Score = 107 bits (118), Expect = 3e-18 Identities = 295/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 71695 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATT 71754 || |||| | ||| | |||||||| ||||| ||||| || || | ||| || ||| Sbjct 619 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCATTCTCACTGGTAAATTCTAAGATT 560 Query 71755 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 || | ||| | ||||| | || || ||||||| |||| |||||| | ||||| ||| Sbjct 559 TCTGCGCATAAGTTACTTCCTTTTATTATTCCTAAGTTTTTTTGATTGTTTTTTTTATTA 500 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || || ||||||||||| | |||||||| || || ||||| | ||| ||||| ||| Sbjct 499 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 440 Query 71875 TTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTA 71934 |||| | | || |||| | ||| | | |||||| | || |||| | Sbjct 439 CTCCATAATTTCTGGGCTGGTATTCTTTTCCATACTTTATTTTCTTTCTCATATTTCTCA 380 Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCAT-TGTCTAATCCAGGACATTCATTCGGACA 71993 ||||| || || || || || || | | | | | || || | ||| ||||| Sbjct 379 TATAAATTATCAAATTCATCACCATAAACCTCAGACAATCCCTTTGCAAT-ATTTGGACA 321 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 | || |||| ||| ||| || | || ||||| || | |||||||| |||||| Sbjct 320 GAATAAACACCAATCTTCATTTTCTTCCACCTTCTTCATGAATAAATCAGGAACCCAAAG 261 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 ||| |||| | ||| |||| ||| || |||||||| || ||| | | ||| | Sbjct 260 TGCTGTAAAAATGCTTCTACTTCTCATCTCTTCTTTTCCTGTGTTTTTTCTTAAATCNAA 201 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTC 72143 || | | || || | |||||| || || Sbjct 200 AAANTCAAGTATTTCTGGATGCCATGGCTC 171 >seq166 Length=1757 Score = 104 bits (114), Expect = 3e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 |||||| ||||| ||| ||||||||| || |||||||| || ||||| || || Sbjct 290 ACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAG 231 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| | || | || || |||||||| ||||| ||||| || | | |||||| Sbjct 230 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 171 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219 ||||||||||| || |||||||| || || || || Sbjct 170 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATC 135 >seq8103 Length=650 Score = 96.9 bits (106), Expect = 5e-15 Identities = 117/157 (75%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAG-ACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGA 42122 |||||| ||||| |||| | |||||||||||| |||||| | || ||||| || | Sbjct 171 ACATGCAAAATC--AGTGTGGCACCCTCATCTCTTGATATTAATACATTAGAAAATGTAA 114 Query 42123 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGA 42182 | || ||||| | || | || || |||||||| ||||| ||||| || | | ||| | Sbjct 113 GACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAAA 54 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219 || |||||||||| || |||||||| || || || || Sbjct 53 AGGTTCCTTCTACAGCTGCAAAGGCGATTAGCCTATC 17 >seq4813 Length=2720 Score = 93.3 bits (102), Expect = 6e-14 Identities = 292/450 (65%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 71695 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATT 71754 || |||| | ||| | |||||||| ||||| || || || || | ||| || ||| Sbjct 2374 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCGTTCTCACTGGTAAATTCTAAGATT 2315 Query 71755 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 || | ||| | ||||| | || | ||||||| |||| ||| || | ||||| ||| Sbjct 2314 TCTGCGCATAAGTTACTTCCTTTTAATATTCCTAAGTTTTTTTGGTTGTTTTTTTTATTA 2255 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || || ||||||||||| | |||||||| || || ||||| | ||| ||||| ||| Sbjct 2254 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 2195 Query 71875 TTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTA 71934 |||| | | || |||| | ||| | | |||||| | || |||| | Sbjct 2194 CTCCATAATTTCTGGGCTGGTATTCTTTTCCATACTTTATTTTCTTTCTCATATTTCTCA 2135 Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCAT-TGTCTAATCCAGGACATTCATTCGGACA 71993 ||||| || || || || || || | | | | | || || | ||| ||||| Sbjct 2134 TATAAATTATCAAATTCATCACCATAAACCTCAGACAATCCCTTTGCAAT-ATTTGGACA 2076 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 | || |||| ||| ||| || | || ||||| || | |||||||| |||||| Sbjct 2075 GAATAAACACCAATCTTCATTTTCTTCCACCTTCTTCATGAATAAATCAGGAACCCAAAG 2016 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 ||| |||| | ||| |||| ||| || |||||||| || ||| | | ||| | Sbjct 2015 TGCTGTAAAAATGNTTCTACTTCTCATCTCTTCTTTTCCTGTGTTTTTTCTTAAATCTAA 1956 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTC 72143 || | | || || | |||||| || || Sbjct 1955 AAATTCAAGTATTTCTGGATGCCATGGCTC 1926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671068503874520