Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2381 143 2e-29 seq7557 140 2e-28 seq7574 131 1e-25 >seq2381 Length=3349 Score = 143 bits (158), Expect = 2e-29 Identities = 190/260 (73%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||| ||| ||||||||||| |||||||| |||||||| || Sbjct 643 CCTCCTCTTAATCTTAGAACCAAATGAAGGGTACTTTCTTTTTGGATGTTGTAGTCAGAA 702 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| | |||||| ||||| | || | | |||||| || ||| Sbjct 703 AGGCTTCTTCCGTCTTCAAGTTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGT 762 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| |||||| ||| || ||| | || |||||||| |||||| Sbjct 763 ATTCCTTCTTTGTCCTGAATTTTAGCT-TTGACATTCTCAATGGTATCTGATGGTTCTAC 821 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT------ATTTGA 15369 ||||| ||||| || || ||||| || || || ||||| |||||||| || || Sbjct 822 CTCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATTAAGGGGTTGGA 881 Query 15370 AAATAAA-ATTTTAATACTT 15388 ||| ||| |||| |||| || Sbjct 882 AAACAAACATTTAAATATTT 901 >seq7557 Length=3014 Score = 140 bits (154), Expect = 2e-28 Identities = 189/260 (73%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||| ||| ||||||| ||| |||||||| |||||||| || Sbjct 2330 CCTCCTCTTAATCTTAGAACCAAATGAATGGTACTTTCTTTTTGGATGTTGTAGTCAGAA 2389 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| | |||||| ||||| | || | | |||||| || ||| Sbjct 2390 AGGCTTCTTCCGTCTTCAAGTTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGT 2449 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| |||||| ||| || ||| | || |||||||| |||||| Sbjct 2450 ATTCCTTCTTTGTCCTGAATTTTAGCT-TTGACATTCTCAATGGTATCTGATGGTTCTAC 2508 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT------ATTTGA 15369 ||||| ||||| || || ||||| || || || ||||| |||||||| || || Sbjct 2509 CTCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATTAAGGGGTTGGA 2568 Query 15370 AAATAAA-ATTTTAATACTT 15388 ||| ||| |||| |||| || Sbjct 2569 AAACAAACATTTAAATATTT 2588 >seq7574 Length=465 Score = 131 bits (144), Expect = 1e-25 Identities = 187/260 (72%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||| ||| ||||||||||| |||||||| |||||||| || Sbjct 201 CCTCCTCTTAATCTTAGAACCAAATGAAGGGTACTTTCTTTTTGGATGTTGTAGTCAGAA 260 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| ||||||| | |||||| | ||| | | |||||| || ||| Sbjct 261 AGACTTCTTCCGTCTTCAAGTTGTTTATTTTTTTTTATAAGTCTTTGTTGATCTGGTGGT 320 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| |||||| ||| || ||| | || |||||||| |||||| Sbjct 321 ATTCCTTCTTTGTCCTGAATTTTAGCT-TTGACATTCTCAATGGTATCTGATGGTTCTAC 379 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT------ATTTGA 15369 ||||| ||||| || || ||||| || || || ||||| |||||||| || || Sbjct 380 CTCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATTAAGGGGTTGGA 439 Query 15370 AAATAAA-ATTTTAATACTT 15388 ||| ||| |||| |||| || Sbjct 440 AAACAAACATTTAAATATTT 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362142002724807