Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1856 132 4e-26 seq166 107 2e-18 >seq1856 Length=1984 Score = 132 bits (146), Expect = 4e-26 Identities = 493/762 (65%), Gaps = 27/762 (4%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||| || ||| | || ||||||||||| ||||||||| ||| || ||||| || Sbjct 1747 TTGATACTCTGCAACAATNTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 1688 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTAGTAAC 12979 ||||||||| |||||||| || || | || |||| | | || | | || | Sbjct 1687 CATAAAATCAAAAGGATTATTT--ACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGT 1630 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||| || |||||| ||| | || || ||| | | | |||||||| | || Sbjct 1629 AATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAA 1570 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 | ||| | | ||| | | ||| | || ||||| ||||||||| ||| || Sbjct 1569 TCTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATT 1510 Query 13100 TCTCTTATTACG-TTCTCTAATGGAGGATTTGATAGATGCT----TAAACATCATACATG 13154 || || ||| || | ||| |||| | ||| |||| | ||||| Sbjct 1509 TCGTAGAT-ACGATTAGCCGATGATTTATTTTGCAAATGAGAGTGTAAA----AGACATG 1455 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||||||| ||| | || |||||||| ||||| || || |||||||| ||||| | Sbjct 1454 CAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAGACCTG 1395 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| | |||| ||| || | |||||| |||| |||||| || | ||| || |||| Sbjct 1394 GCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTC 1335 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCC 13334 |||| || |||||||| || || | ||| || | | | | || | | | || Sbjct 1334 CTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATCTGAA---GCAATGT 1278 Query 13335 ACTTTCTGGCCCAGTTTG-CTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 | ||| ||||| | | |||||| | | || | || || | ||| |||||| Sbjct 1277 ATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGT-ATTGTTGAAACTGCATTAAAT 1219 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC----TATACAT 13449 | ||| || || | | || | || || | ||||||||| |||||| Sbjct 1218 AGCCTATTCTTCTCTTCAGAATC-AGAAACCAACACT---TCAATAAGCAAAGAATACAT 1163 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 || ||||| || |||||| ||||||||||| |||||| ||| || |||| || Sbjct 1162 CTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTAT 1103 Query 13510 CTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569 |||||| || ||||||| | || | ||||| |||| || || ||| || || Sbjct 1102 CTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGC 1043 Query 13570 aaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 |||||| || |||| || |||||||| ||| |||| | ||| Sbjct 1042 AAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTC 1001 >seq166 Length=1757 Score = 107 bits (118), Expect = 2e-18 Identities = 297/451 (66%), Gaps = 14/451 (3%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||| || ||| | || ||||||||||| ||||||||| ||| || ||||| || Sbjct 578 TTGATACTCTGCAACCTTCTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 519 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTAGTAAC 12979 ||||||||| |||||||| || || | || |||| | | || | | || | Sbjct 518 CATAAAATCAAAAGGATTATTT--ACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGT 461 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||| || |||||| ||| | || || ||| | | | |||||||| | || Sbjct 460 AATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAA 401 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 | ||| | | ||| | | ||| | || ||||| ||||||||| ||| || Sbjct 400 TCTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATT 341 Query 13100 TCTCTTATTACG-TTCTCTAATGGAGGATTTGATAGATGCT----TAAACATCATACATG 13154 || || ||| || | ||| |||| | ||| |||| | ||||| Sbjct 340 TCGTAGAT-ACGATTAGCCGATGATTTATTTTGCAAATGAGAGTGTAAA----AGACATG 286 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||||||| ||| | || ||||| || ||||| || || |||||||| ||||| | Sbjct 285 CAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAGACCTG 226 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| | |||| ||| || | |||||| |||| |||||| || | ||| || |||| Sbjct 225 GCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTC 166 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTC 13305 |||| || |||||||| || || | ||| || Sbjct 165 CTTCTACAGCTGCAAAGGCGATTAGCCTATC 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430938136356654