Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7557 197 3e-45 seq2381 197 3e-45 seq7574 161 2e-34 seq1856 123 6e-23 seq166 107 4e-18 seq932 102 2e-16 seq4968 96.9 8e-15 >seq7557 Length=3014 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| || || || | ||| | ||| |||||| || || || |||||||| Sbjct 2329 TCCTCCTCTTAATCTTAGAACCAAATGAATGGTACTTTCTTTTTGGATGTTGTAGTCAGA 2388 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || |||| |||||||| |||||||| ||||||||||| || || |||||||| || || Sbjct 2389 AAGGCTTCTTCCGTCTTCAAGTTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGG 2448 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||||||| |||||||| || ||||| ||||| || | |||||| |||||||| Sbjct 2449 TATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATGGTATCTGATGGTTCTAC 2508 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| ||||| ||||| || || ||||| || ||||| || |||||| Sbjct 2509 CTCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATT 2557 >seq2381 Length=3349 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| || || || | ||| | ||| |||||| || || || |||||||| Sbjct 642 TCCTCCTCTTAATCTTAGAACCAAATGAAGGGTACTTTCTTTTTGGATGTTGTAGTCAGA 701 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || |||| |||||||| |||||||| ||||||||||| || || |||||||| || || Sbjct 702 AAGGCTTCTTCCGTCTTCAAGTTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGG 761 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||||||| |||||||| || ||||| ||||| || | |||||| |||||||| Sbjct 762 TATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATGGTATCTGATGGTTCTAC 821 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| ||||| ||||| || || ||||| || ||||| || |||||| Sbjct 822 CTCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATT 870 >seq7574 Length=465 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| || || || | ||| | ||| |||||| || || || |||||||| Sbjct 200 TCCTCCTCTTAATCTTAGAACCAAATGAAGGGTACTTTCTTTTTGGATGTTGTAGTCAGA 259 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||| |||| |||||||| |||||||| || || || |||||||| || || Sbjct 260 AAGACTTCTTCCGTCTTCAAGTTGTTTATTTTTTTTTATAAGTCTTTGTTGATCTGGTGG 319 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||||||| |||||||| || ||||| ||||| || | |||||| |||||||| Sbjct 320 TATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATGGTATCTGATGGTTCTAC 379 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| ||||| ||||| || || ||||| || ||||| || |||||| Sbjct 380 CTCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATT 428 >seq1856 Length=1984 Score = 123 bits (136), Expect = 6e-23 Identities = 481/739 (65%), Gaps = 23/739 (3%) Strand=Plus/Plus Query 268828 AGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGT 268887 ||| ||||||| ||||| || | || || |||||||| | ||||||||| || Sbjct 1003 AGATGAAAGAAATTTTATTAAACATGTACTCGCATTTTTTGCGGCATCTGATGGTATTGT 1062 Query 268888 TAACGAAAATCTAGTAGAGAAGTTCTGTCAAG--AGGTACAGATTCCTGAAGCCAGATGT 268945 || |||||||| | | ||| | || |||| |||| ||||| || ||||| ||| Sbjct 1063 TATGGAAAATCTGGCTGT-AAGATTTG-CAAGTGAGGTTCAGATACCAGAAGCAAGAGCA 1120 Query 268946 TTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATA 269005 ||||| ||||| |||||||| ||| || ||||| |||||||| | | | || Sbjct 1121 TTTTATTCCTTCCAAATAGCTATGGAAGTAATCCATTCTGAGATGTATTCTTTGCTTATT 1180 Query 269006 GATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAACTATG 269065 || | | |||| | || ||||| || |||||| | | | ||| || Sbjct 1181 GAAGTGTTGGTTTCTGATTCTGAAGAGAAGAATAGGCTATTTAATGCAGTTTCAACAATA 1240 Query 269066 GACTGT-GTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC---GATAGCGCGCC 269121 || | || || ||||| | |||||||| | |||| || ||| | | | Sbjct 1241 C-CTATAGTCAGGAAAAAGGCCGAATGGGCATTAAAATACATTGCTTCAGATTCCCC-CT 1298 Query 269122 TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTT 269181 ||| | || ||| || | || ||||| ||||||||||| || |||||| | || || Sbjct 1299 TTA--GCGATAGGCTAATCGCCTTTGCAGCTGTAGAAGGAATTTTCTTTAGTAGCTCCTT 1356 Query 269182 TGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGA 269241 ||| |||| |||||| | ||||||||||| | |||||||| | || || ||||| || Sbjct 1357 TGCTTCTATTTTTTGGCTAAAGAAAAGAGGATTGATGCCAGGTCTTACATTTTCTAATGA 1416 Query 269242 ATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTA 269301 ||| ||| || || || |||| ||| || || || ||| | ||| ||| | | Sbjct 1417 ATTAATATCAAGAGATGAGGGTTGCCACACTGATTTTGCATGTCTTTTA--CACT-CTCA 1473 Query 269302 TCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGT 269361 | | | | ||| | || || | | |||||||| || |||||| ||| | Sbjct 1474 TTTGCAAAATAAATCATCGGCTAATCGTATCTACGAAATCATTACTTCAGCAGTTGAATT 1533 Query 269362 AGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATC 269421 |||| ||||||| | | || | || | ||| | | || |||||| || || Sbjct 1534 AGAAGAAGAATTTGTTAGAGATTCCCTTAAAGTAGATTTGCTTGGAATGAAT-TCATCTC 1592 Query 269422 -GATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGT--GTCTTTAGGGTTTAG 269478 ||| ||||| |||||| || | ||| ||| ||||| |||| || || | Sbjct 1593 TTATGTCGCAATATGTTAAGTATGTTGCGGATGTATTACTGGTAAATCTT---GGCTTGG 1649 Query 269479 TAAAA-AATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTA 269537 |||| | || || || | ||||| ||| ||||||||||||||| || ||| ||| | Sbjct 1650 CAAAACATTACAAAGTAAATAATCCTTTTGATTTTATGGAGAATATCTCTTTAAGAGGAA 1709 Query 269538 AGGCTAATTTCTTCGAGAA 269556 | |||| || || ||||| Sbjct 1710 AAACTAACTTTTTTGAGAA 1728 >seq166 Length=1757 Score = 107 bits (118), Expect = 4e-18 Identities = 288/433 (67%), Gaps = 11/433 (3%) Strand=Plus/Plus Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188 || ||| || | || ||||| ||||||||||| || |||||| | || ||||| || Sbjct 135 GATAGGCTAATCGCCTTTGCAGCTGTAGAAGGAATTTTCTTTAGTAGCTCCTTTGCTTCT 194 Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248 || |||||| | ||||||||||| | |||||||| | || || ||||| ||||| ||| Sbjct 195 ATTTTTTGGCTAAAGAAAAGAGGATTGATGCCAGGTCTTACATTTTCTAATGAATTAATA 254 Query 269249 AGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCA 269308 || || || |||| ||| || || || ||| | ||| ||| | || | | Sbjct 255 TCAAGNGATGAGGGTTGNCACACTGATTTTGCATGTCTTTTA--CACT-CTCATTTGCAA 311 Query 269309 CACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACA 269368 | ||| | || || | | |||||||| || |||||| ||| ||||| | Sbjct 312 AATAAATCATCGGCTAATCGTATCTACGAAATCATTACTTCAGCAGTTGAATTAGAAGAA 371 Query 269369 GAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATC-GATGAT 269427 |||||| | | || | || | ||| | | || |||||| || || ||| Sbjct 372 GAATTTGTTAGAGATTCCCTTAAAGTAGATTTGCTTGGAATGAAT-TCATCTCTTATGTC 430 Query 269428 AGAATATATTAAGTTCGTATCTGATAGATTGCTGGT--GTCTTTAGGGTTTAGTAAAA-A 269484 ||||| |||||| || | ||| ||| ||||| |||| || || | |||| | Sbjct 431 GCAATATGTTAAGTATGTTGCGGATGTATTACTGGTAAATCTT---GGCTTGGCAAAACA 487 Query 269485 ATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAA 269544 || || || | ||||| ||| ||||||||||||||| || ||| ||| || |||| Sbjct 488 TTACAAAGTAAATAATCCTTTTGATTTTATGGAGAATATCTCTTTAAGAGGAAAAACTAA 547 Query 269545 TTTCTTCGAGAAG 269557 || || |||||| Sbjct 548 CTTTTTTGAGAAG 560 >seq932 Length=2997 Score = 102 bits (112), Expect = 2e-16 Identities = 177/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652 |||||| | | || | ||||||||| | ||| ||||||||| ||| || ||||| Sbjct 1937 TGGAATGCAGGACAAAAACAAATGGTGATTACAGGTAAAATGCATGGTTATGTAAGAATG 1878 Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGT 238712 |||||||| |||| |||| |||||| | | | ||| | ||||| | | || | || Sbjct 1877 TATTGGGCCAAAACATTACTACAATGGAGCAAAACACCAGAAGAAGCAC-TGGAAAGAGC 1819 Query 238713 A-TTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTTG 238771 | ||||| |||| ||||| || | | || || | ||||| || |||||| |||| Sbjct 1818 ATTTTATTTGAATGATAAGTATTCAATTGATGGAAATGATCCAAATGGATACCTAGGAAT 1759 Query 238772 TATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGAAA 238831 ||||||||| || ||||||| | ||| || ||| | |||||| || |||| || Sbjct 1758 TATGTGGTCTATTTGTGGATCAATGGATCAGGGTTGGGCGGAGAGAGAAATTATTGGTAA 1699 Query 238832 AGTTAGATACATGAA 238846 | | ||| ||||| Sbjct 1698 AATAAGAGCTATGAA 1684 >seq4968 Length=2160 Score = 96.9 bits (106), Expect = 8e-15 Identities = 176/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652 |||||| | | || | ||||||||| | ||| ||||||||| ||| || ||||| Sbjct 307 TGGAATGCAGGACAAAAACAAATGGTGATTACAGGTAAAATGCATGGTTATGTAAGAATG 248 Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGT 238712 |||||||| |||| | || |||||| | | | ||| | ||||| | | || | || Sbjct 247 TATTGGGCCAAAACATTGCTACAATGGAGCAAAACACCAGAAGAAGCAC-TGGAAAGAGC 189 Query 238713 A-TTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTTG 238771 | ||||| |||| |||||||| | || || | ||||| || |||||| |||| Sbjct 188 ATTTTATTTGAATGATAAATATTCTATTGATGGAAATGATCCAAATGGATACCTAGGAAT 129 Query 238772 TATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGAAA 238831 ||||||||| || ||||||| | ||| || ||| | |||||| || |||| || Sbjct 128 TATGTGGTCTATTTGTGGATCAATGGATCAGGGTTGGGCGGAGAGAGAAATTATTGGTAA 69 Query 238832 AGTTAGATACATGAA 238846 | | ||| ||||| Sbjct 68 AATAAGAGCTATGAA 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151274082435316