Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1856 145 8e-30 seq166 116 4e-21 seq8103 87.8 2e-12 >seq1856 Length=1984 Score = 145 bits (160), Expect = 8e-30 Identities = 350/528 (66%), Gaps = 12/528 (2%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||||||||||||| || |||| ||||| || ||||||||||||||||||||| | Sbjct 1459 ACATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAG 1400 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAG 21592 ||| ||||| |||||||| || |||| |||||| || || ||||| ||| || |||| Sbjct 1399 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACT--AAAG 1342 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCC 21652 ||||| || || || || ||||| || | || | || | | | || || | | | Sbjct 1341 AAAATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATC-TGAAGC 1283 Query 21653 AATATCCATTTTTCTGCCCATTTTGCC-TTTTCTTTAATACAATCAATTGTATCAATAGC 21711 ||| | ||||| |||||||| ||| ||||| | | || | ||||| || || Sbjct 1282 AATGT--ATTTTAATGCCCATTCGGCCTTTTTCCTGACTA-TAGGTATTGTTGAAACTGC 1226 Query 21712 TTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATA 21771 || || || ||| || || || ||| | | | ||| Sbjct 1225 ATTAAATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGAATA 1166 Query 21772 CATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGA 21831 ||| |||||||| || ||| || ||||| || || ||||| |||||| |||| Sbjct 1165 CATCTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGG 1106 Query 21832 ACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGC 21891 |||||||| ||||| | ||||| ||||| | || || |||||| || Sbjct 1105 TATCTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGC 1046 Query 21892 GGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT---TTTTT 21948 ||||||||||| | || || ||| ||||||| || ||| | || | ||| |||| Sbjct 1045 CGCAAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTC 986 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 ||| || || ||| | |||||| ||||| |||||||||||||| Sbjct 985 CCATTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAA 938 >seq166 Length=1757 Score = 116 bits (128), Expect = 4e-21 Identities = 114/146 (78%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||||||||||||| || |||| ||||| || ||||||||||||||||||||| | Sbjct 290 ACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAG 231 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAG 21592 ||| ||||| |||||||| || |||| |||||| || || ||||| ||| || |||| Sbjct 230 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACT--AAAG 173 Query 21593 AAAATGCCCTCAACGGCAGCAAATGC 21618 ||||| || || || || ||||| || Sbjct 172 AAAATTCCTTCTACAGCTGCAAAGGC 147 >seq8103 Length=650 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||||||||||||| || | ||| |||| || ||||||| ||||||||||||| | Sbjct 171 ACATGCAAAATCAGTGTGGCACCCT-CATCTCTTGATATTAATACATTAGAAAATGTAAG 113 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAG 21592 ||| ||||| |||||||| || |||| |||||| || || ||||| ||| || ||| Sbjct 112 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACT--AAAA 55 Query 21593 AAAATGCCCTCAACGGCAGCAAATGC 21618 || | || || || || ||||| || Sbjct 54 AAGGTTCCTTCTACAGCTGCAAAGGC 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531844770899480