Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1856 150 2e-31 seq1148 104 3e-17 seq4813 91.5 2e-13 seq166 89.7 6e-13 >seq1856 Length=1984 Score = 150 bits (166), Expect = 2e-31 Identities = 408/619 (66%), Gaps = 9/619 (1%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 |||||| ||||| ||| |||||| ||||| |||| ||| || ||||| || || Sbjct 1459 ACATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAG 1400 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| | || | || || |||||||| || ||||| || || | | |||||| Sbjct 1399 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 1340 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-TA 33481 ||||||||||| || |||||||| || || || || | | || || | | | | | Sbjct 1339 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTA-AAGGGGGAATCTGAAGCAA 1281 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 | | ||| ||||| |||||||| || | || ||| || ||| | ||||||| Sbjct 1280 TGTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAA 1221 Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACAT 33599 | || || || || | | ||| ||| | || || | ||||| |||||| Sbjct 1220 ATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGA--ATACAT 1163 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || ||||| || ||| || || || || || || || ||| || || | || Sbjct 1162 CTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTAT 1103 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || || | ||||| | | |||| |||||| | || || || ||| || || Sbjct 1102 CTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGC 1043 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCA 33776 |||||| || | ||||||||| ||||||| | |||| ||| | | | || | ||| Sbjct 1042 AAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCA 983 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||| |||| || || ||| ||||| || ||||||||| ||| ||||||| Sbjct 982 TTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAA 923 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||||||||| | ||| || | |||| || ||||| | |||||| || | | | Sbjct 922 TTTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCTTTCTTCTGT 863 Query 33897 TGGTGCAAGGATGGGTTCC 33915 |||| ||| || || ||| Sbjct 862 AGGTGTAAGTATTGGGTCC 844 >seq1148 Length=2199 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 62889 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62948 || |||| | ||| | |||||||| ||||| ||||| || | | ||| || || Sbjct 619 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCATTCTCACTGGTAAATTCTAAGATT 560 Query 62949 TCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63008 || | ||| | ||||| | || || ||||||| |||| |||||| | ||||| ||| Sbjct 559 TCTGCGCATAAGTTACTTCCTTTTATTATTCCTAAGTTTTTTTGATTGTTTTTTTTATTA 500 Query 63009 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63068 || || |||||||||||| |||||||||| || || ||||| | ||| ||||| ||| Sbjct 499 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 440 Query 63069 TTCCA 63073 |||| Sbjct 439 CTCCA 435 >seq4813 Length=2720 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 62889 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62948 || |||| | ||| | |||||||| ||||| || || || | | ||| || || Sbjct 2374 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCGTTCTCACTGGTAAATTCTAAGATT 2315 Query 62949 TCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63008 || | ||| | ||||| | || | ||||||| |||| ||| || | ||||| ||| Sbjct 2314 TCTGCGCATAAGTTACTTCCTTTTAATATTCCTAAGTTTTTTTGGTTGTTTTTTTTATTA 2255 Query 63009 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63068 || || |||||||||||| |||||||||| || || ||||| | ||| ||||| ||| Sbjct 2254 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 2195 Query 63069 TTCCA 63073 |||| Sbjct 2194 CTCCA 2190 >seq166 Length=1757 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 |||||| ||||| ||| |||||| || || |||| ||| || ||||| || || Sbjct 290 ACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAG 231 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| | || | || || |||||||| || ||||| || || | | |||||| Sbjct 230 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 171 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458 ||||||||||| || |||||||| || || || || Sbjct 170 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATC 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622881580299320