Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq233 87.8 2e-12 seq5717 86.0 8e-12 seq4179 86.0 8e-12 >seq233 Length=4434 Score = 87.8 bits (96), Expect = 2e-12 Identities = 206/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Minus Query 104985 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAAT 105044 ||| ||| || |||||||| || |||| || ||||||||| ||||| ||| ||| | | Sbjct 1724 GAAGAGAGGGGGATTTAGGTCCTGTTTACGGCTTTCAATGGCGACATTATGGTGCTAATT 1665 Query 105045 ATATCGAC-TGTGATACCGACTATACCGGCCAAGGTATAGACCAATTAAGTCAAGTTATA 105103 ||| |||| ||||| |||||| || |||| || || || || | ||||| Sbjct 1664 ATA-CGACCTGTGAAGAAGACTATTCCAATAAAGGAATTGATCAGTTGCAAAATGTTATT 1606 Query 105104 GAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAGTTGGAATGTGTCA 105163 | ||||| ||||| || | | ||||| ||||| | | | |||||| | Sbjct 1605 AATGAGATAAAGAATAATCCAGATAGCAGAAGATTAATTGTTGTTTCATGGAATCCAATA 1546 Query 105164 CAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATTTTACATTAGAAAT 105223 || | ||| |||||| | || || || |||| || | || ||| | ||| |||| Sbjct 1545 CAGCTTAAAGAGATGGCTTTGCCTCCATGCCATTTATTATTCCAGTTTAATGTTACAAAT 1486 Query 105224 AAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCA 105283 | ||| | ||||| || ||||||||||| | ||| | ||||||||| |||| Sbjct 1485 GGATTTT---TGAATTGTGCTTTATATCAAAGATCAGGTGATGTTGGATTAGGTATACCT 1429 Query 105284 TATAATAT 105291 | |||||| Sbjct 1428 TTTAATAT 1421 >seq5717 Length=1870 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 126893 AGGAGGAGAAACAATGTATTGTGGTTTTACTGGAAGAAGGATAAAGAGTA-AAATTTTTA 126951 |||| |||| ||||||||||||||||| || ||| | | | || | |||| || | Sbjct 463 AGGATTAGAAGTTATGTATTGTGGTTTTACAGGTCGAAAGTTGCA-AGCACAAATATTCA 405 Query 126952 TAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCTAGA 127010 |||| |||||||||||||| | | || ||||||||| | |||||||||||||| ||| Sbjct 404 TAGGCCCAACATACTATCAAAGATTAAAGCATATGGTTGAGGATAAAATGCATGCAAGA 346 >seq4179 Length=1231 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 126893 AGGAGGAGAAACAATGTATTGTGGTTTTACTGGAAGAAGGATAAAGAGTA-AAATTTTTA 126951 |||| |||| ||||||||||||||||| || ||| | | | || | |||| || | Sbjct 156 AGGATTAGAAGTTATGTATTGTGGTTTTACAGGTCGAAAGTTGCA-AGCACAAATATTCA 214 Query 126952 TAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCTAGA 127010 |||| |||||||||||||| | | || ||||||||| | |||||||||||||| ||| Sbjct 215 TAGGCCCAACATACTATCAAAGATTAAAGCATATGGTTGAGGATAAAATGCATGCAAGA 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658333845452920