Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1856 315 8e-81 seq166 172 6e-38 seq8103 161 1e-34 seq1148 150 2e-31 >seq1856 Length=1984 Score = 315 bits (348), Expect = 8e-81 Identities = 609/891 (68%), Gaps = 30/891 (3%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || ||||| | || ||||| || ||||||||||| ||| || ||| || Sbjct 1747 TTGATACTCTGCAACAATNTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 1688 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAG 18791 |||||||||||| ||||| ||||| || || |||| || || | | || |||| Sbjct 1687 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTAA 1628 Query 18792 TCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 | |||||| ||| | |||| |||| ||| | | |||||||||| | || | Sbjct 1627 TACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAATC 1568 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC-----TGATATA 18906 || || | |||| ||| |||||||| ||||| | ||||| |||| | Sbjct 1567 TACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATTTC 1508 Query 18907 ATAGATACAACT---CTATC-TTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACA 18962 ||||||| | | | || || ||| | | | ||| || |||| | ||| Sbjct 1507 GTAGATACGATTAGCCGATGATTTATTTTGC----AAATGAGA-GTGTAAA----AGACA 1457 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 |||||||||| || ||||| ||||| ||| ||||||||||||||||| | ||| Sbjct 1456 TGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAGACC 1397 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 ||||||| ||||||||| |||| ||| || ||||||||||| || | | |||||| || Sbjct 1396 TGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAAT 1337 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 |||||||| |||||||| || | ||| || || | | | | ||| | | | ||| Sbjct 1336 TCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATC-TGA--AGCAAT 1280 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||| | |||||| || ||||| || | || || ||||| | | |||||| Sbjct 1279 GTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAAA 1220 Query 19203 TAG---ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 ||| || | | ||| || | ||| ||| | | || || | ||| ||||| Sbjct 1219 TAGCCTATTCTT---CTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGAATACAT 1163 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 || ||||| || ||| ||||| || || || ||||| ||||||||||| ||| Sbjct 1162 CTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTAT 1103 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||| || ||||| ||||||| | ||| |||||| |||| || |||||| || || Sbjct 1102 CTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGC 1043 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT---CCA 19436 ||||||||| | ||||||||||||||||| | |||||||| | ||| | || ||| Sbjct 1042 AAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCA 983 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 ||| |||| || |||||| ||||| ||| ||||||||| || |||||||| Sbjct 982 TTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAA 923 Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 ||||||||| | |||||| | | |||| ||||| || | |||||| || Sbjct 922 TTTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCT 872 >seq166 Length=1757 Score = 172 bits (190), Expect = 6e-38 Identities = 312/453 (69%), Gaps = 18/453 (4%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || ||||| | || ||||| || ||||||||||| ||| || ||| || Sbjct 578 TTGATACTCTGCAACCTTCTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 519 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAG 18791 |||||||||||| ||||| ||||| || || |||| || || | | || |||| Sbjct 518 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTAA 459 Query 18792 TCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 | |||||| ||| | |||| |||| ||| | | |||||||||| | || | Sbjct 458 TACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAATC 399 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC-----TGATATA 18906 || || | |||| ||| |||||||| ||||| | ||||| |||| | Sbjct 398 TACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATTTC 339 Query 18907 ATAGATACAACT---CTATC-TTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACA 18962 ||||||| | | | || || ||| | | | ||| || |||| | ||| Sbjct 338 GTAGATACGATTAGCCGATGATTTATTTTGC----AAATGAGA-GTGTAAA----AGACA 288 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 |||||||||| || ||||| || || ||| ||||||||||||||||| | ||| Sbjct 287 TGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAGACC 228 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 ||||||| ||||||||| |||| ||| || ||||||||||| || | | |||||| || Sbjct 227 TGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAAT 168 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTC 19115 |||||||| |||||||| || | ||| || || Sbjct 167 TCCTTCTACAGCTGCAAAGGCGATTAGCCTATC 135 >seq8103 Length=650 Score = 161 bits (178), Expect = 1e-34 Identities = 312/454 (69%), Gaps = 21/454 (5%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || ||||| | || ||||| || ||||||||||| ||| || ||| || Sbjct 459 TTGATACTCTGCAACCTTCTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 400 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAG 18791 |||||||||||| ||||| ||||| || || |||| || || | | || |||| Sbjct 399 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGCCAAGCCAAGATTTACCAGTAA 340 Query 18792 TCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 | |||||| ||| | |||| |||| ||| | | |||||||||| | || | Sbjct 339 TACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAATC 280 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC-----TGATATA 18906 || || | |||| ||| |||||||| ||||| | ||||| |||| | Sbjct 279 TACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATTTC 220 Query 18907 ATAGATACAACT---CTATC-TTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACA 18962 ||||||| | | | || || ||| | | | ||| || |||| | ||| Sbjct 219 GTAGATACGATTAGCCGATGATTTATTTTGC----AAATGAGA-GTGTAAA----AGACA 169 Query 18963 TGCAAAATCACAATGTAGT-CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAAC 19021 |||||||||| ||| | ||||| ||||| ||| ||| ||||||||||||| | || Sbjct 168 TGCAAAATCAG--TGTGGCACCCTCATCTCTTGATATTAATACATTAGAAAATGTAAGAC 111 Query 19022 CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATA 19081 | ||||||| ||||||||| |||| ||| || ||||||||||| || | | ||| || Sbjct 110 CTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAAAAGG 51 Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTC 19115 | |||||||| |||||||| || | ||| || || Sbjct 50 TTCCTTCTACAGCTGCAAAGGCGATTAGCCTATC 17 >seq1148 Length=2199 Score = 150 bits (166), Expect = 2e-31 Identities = 341/502 (68%), Gaps = 13/502 (3%) Strand=Plus/Minus Query 46971 TCTTTTTCCACAGTAAACTTAATTG--GATTACTCGCTGATTTTGTTCGTAAATAATACA 47028 ||||| || || ||||||||||| | ||| ||| | || ||| | || ||||||| Sbjct 1597 TCTTTATCAACTGTAAACTTAATAGCAGATGACTTA--GGTTGTGTCCTTAGGTAATACA 1540 Query 47029 TACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATT-TAGAATAA 47087 | || |||||||| || |||| |||||||||||||||||||| | | | | || Sbjct 1539 TTCCTGTCTTTAACCCATTCTTCCAACCATAGAAATGCATACTAGTAAGCTGTTGCATTG 1480 Query 47088 CTAGGTT-CTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATC 47146 | | | || | | | |||||| | || ||| ||||||||||||||| |||||| | Sbjct 1479 TTGGACTACTCATAAA--AATATTTAAGGACTGAGTCTGATCAATAAATGGTCCTCTACC 1422 Query 47147 AGCTGCCATATCTAAAATAACCCTTTGTGGTAT-CTCCCATACTGTTTTATAAATTTGTT 47205 | ||| | ||| | |||| | ||| | ||| ||||||||||||||||||||| | Sbjct 1421 AACTGATAAATCAATAATA-CTCTTCATTTTATACTCCCATACTGTTTTATAAATGTCCC 1363 Query 47206 TAATGTCTTCTGGGAG-ATTAGTAT--TTTGAATAGATCCTCCgttttctataattttgt 47262 | || |||| || | || |||| |||||||||||||| | || | || | | | Sbjct 1362 TTATTTCTTTAGGTATTATGGGTATGTTTTGAATAGATCCTTCATTCTGAATCAATAAAT 1303 Query 47263 tttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAA 47322 |||| | ||| || ||| | | || ||| |||| || || | ||| ||||| Sbjct 1302 TTTTGATTTCTTTGTTCCACAATCCTCTTTCTATTAAATCCTTCAATAAATGTTTATTAA 1243 Query 47323 CAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTA 47382 | ||| ||||||||| | | || | | || || ||| ||| ||||||| | Sbjct 1242 TTACCTGATATTCTCCAGCCAATGTTCGTCTTGTGTAAATGTTAGAAGTAAATGGTTCAA 1183 Query 47383 TAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATA 47442 | |||||||| |||| ||||| | || | ||||| ||||| | ||| ||| | Sbjct 1182 TGCATTCATTAAACCCAAGTATTTGTGAGGTAGTAGCTGTTGGCATACAAGCAGTTAACA 1123 Query 47443 AGCTATTTCTTACTCCATATTT 47464 | ||| |||||||||| ||| Sbjct 1122 AAGAATTCCTTACTCCATGTTT 1101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562049588864280