Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1148 131 9e-26 seq4813 113 2e-20 >seq1148 Length=2199 Score = 131 bits (144), Expect = 9e-26 Identities = 526/803 (66%), Gaps = 28/803 (3%) Strand=Plus/Minus Query 24652 TTCTTTTTCTAATGTAAATTGCTTAGCTGAT-ACTGCTGGTTTAGTTCTAAGATAATACA 24710 |||||| || | |||||| | |||| ||| ||| |||| || || || ||||||| Sbjct 1598 TTCTTTATCAACTGTAAACTTAATAGCAGATGACTTA-GGTTGTGTCCTTAGGTAATACA 1540 Query 24711 TTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTT-TTGCAATG 24769 |||| || || || ||||||||||| || |||||||| || || | ||||| || Sbjct 1539 TTCCTGTCTTTAACCCATTCTTCCAACCATAGAAATGCATACTAGTAAGCTGTTGCATTG 1480 Query 24770 TTTGCTGATTC-TAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATC 24828 || | | || |||||| | || | || |||| || || ||| || |||| | Sbjct 1479 TTGGACTACTCATAAAAATA--TTTAAGGACTGAGTCTGATCAATAAATGGTCCTCTACC 1422 Query 24829 TGCAGCTAAGTCAATGATCGTTTTCATCGATATA-TCGTAAGCTGTTTTGTATCTCTCTT 24887 | | ||| ||||| || | ||||| |||| || | ||||||| || | || Sbjct 1421 AACTGATAAATCAATAATACTCTTCATTT-TATACTCCCATACTGTTTTATAAATGTCCC 1363 Query 24888 TTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT-TTCTC--TCAATAGAT 24944 |||| || | || || | | || ||||||| ||||| | |||| |||||| || Sbjct 1362 TTATTTCTTTAGGTATTATGGGTATGTTTTGAATAGATCCTTCATTCTGAATCAATAAAT 1303 Query 24945 TCAATCTCATATTCGGTGTCCAAAGAT--TAATTTTTTCAAGATCTCTAATCAAGTGTTT 25002 | | | || ||| ||| | | || | || | | || || ||| || ||||| Sbjct 1302 T---TTTGAT-TTCTTTGTTCCACAATCCTCTTTCTATTAAATCCTTCAATAAA-TGTTT 1248 Query 25003 ATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGG 25062 ||| || | | ||||||||| ||| || |||| | | | ||| ||||| ||||| Sbjct 1247 ATTAATTACCTGATATTCTCCAGCCAATGTTCGTCTTGTGTAAATGTTAGAAGTAAATGG 1188 Query 25063 TTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTAT 25122 ||||| ||||||||| || | ||||| || |||| ||||||||||| | || | Sbjct 1187 TTCAATGCATTCATTAAACCCAAGTATTTGTGAGGTAGTAGCTGTTGGCATACAAGCAGT 1128 Query 25123 TAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTA-TCCCAATCTA 25181 ||| | ||||| || | |||| ||||| || | | || ||| | |||||||||| Sbjct 1127 TAACAAAGAATTCCTTACTCCATGTTTAATGAT-TTTATTTCTAAGAGACTCCCAATCTA 1069 Query 25182 AATTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCTG 25241 ||| |||| ||| | || | || || || ||||||||| || ||| | | Sbjct 1068 AATGATTA-CTAGGT--TTAACATT-CCACAT--ATCAAATTGAAATTCTCCTTTAGAAA 1015 Query 25242 CAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGAT-TGC 25300 ||| ||| ||||||| |||||| |||| | ||| |||| || || | | Sbjct 1014 TAGGTGATCCTTCAAAAGATGAATAAGCTCCTTCTTCTATAGCCA-ATAGGTTACTCTCT 956 Query 25301 TCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCT 25360 ||||| || ||||| || ||| |||||| || | | ||||| | ||||||| || Sbjct 955 TCTAATGCTGCATAGTAAATACATTCAAAGATATTTCTATTTAATATTTTAGCTTCCTCG 896 Query 25361 CCATCGAAAGCAATTTCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAATCCA 25420 ||| || | |||| | | ||| || ||| ||||| || || ||||| | ||| Sbjct 895 GAATCAAATGATATTTTAAGCATGGCAAATAAATCAGCTAAGCCTTGTACTCCAATACCA 836 Query 25421 ACTGGACGATGTTTATTATTACT 25443 | || | ||| ||| | || || Sbjct 835 ATGGGTCTATGCTTAATGTTGCT 813 Score = 109 bits (120), Expect = 3e-19 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 25885 AATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944 ||||||||||||||||||| |||||| |||||| || || |||| ||| |||||||| Sbjct 332 AATATTTGGACAGAATAAACACCAATCTTCATTTTCTTCCACCTTCTTCATGAATAAATC 273 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCC-GTGATTCT 26003 |||| ||| | ||| ||| | ||| |||||| ||||||||||| ||| || | Sbjct 272 AGGAACCCAAAGTGCTGTAAAAATGCTTCTACTTCTCATCTCTTCTTTTCCTGTG-TTTT 214 Query 26004 TTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTC 26046 || ||| ||| || || |||| || |||| |||||||| || Sbjct 213 TTCTTAAATCNAAAAANTCAAGTATTTCTGGATGCCATGGCTC 171 >seq4813 Length=2720 Score = 113 bits (124), Expect = 2e-20 Identities = 124/163 (76%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 25885 AATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944 ||||||||||||||||||| |||||| |||||| || || |||| ||| |||||||| Sbjct 2087 AATATTTGGACAGAATAAACACCAATCTTCATTTTCTTCCACCTTCTTCATGAATAAATC 2028 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCC-GTGATTCT 26003 |||| ||| | ||| ||| | ||| |||||| ||||||||||| ||| || | Sbjct 2027 AGGAACCCAAAGTGCTGTAAAAATGNTTCTACTTCTCATCTCTTCTTTTCCTGTG-TTTT 1969 Query 26004 TTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTC 26046 || ||| |||||| || |||| || |||| |||||||| || Sbjct 1968 TTCTTAAATCTAAAAATTCAAGTATTTCTGGATGCCATGGCTC 1926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253014011764025