Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1856 172 8e-38 seq2381 127 3e-24 seq7557 123 4e-23 seq7574 105 1e-17 seq166 98.7 1e-15 seq8103 89.7 8e-13 >seq1856 Length=1984 Score = 172 bits (190), Expect = 8e-38 Identities = 377/559 (67%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 18151 TAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAA 18210 ||| | ||| |||||||||||||| |||| |||||||| ||||||||||| ||| ||| Sbjct 1465 TAAAAGACATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAA 1406 Query 18211 CGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGA 18270 || | || ||||| | |||||||| ||||||||||| || || || || ||| Sbjct 1405 TGTAAGACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACT 1346 Query 18271 AAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT 18330 |||||| || || || || || || || |||| || || || ||| | | | Sbjct 1345 AAAGAAAATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATC-GCTAAAGGGGGAATCTG 1287 Query 18331 GCTCAGTATCCATTTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTA 18389 || | | ||||| ||||||||| |||| || | ||||| | | Sbjct 1286 AAGCAATGT--ATTTTAATGCCCATTCGGCCTTTTTCCTGACTATA-GGTATTGTTGAAA 1230 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 |||||||| | || || |||| ||||| | | || || | ||||| Sbjct 1229 CTGCATTAAATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAG 1170 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 ||||||| |||||||| || |||||||||||| || || |||||| | ||| || | Sbjct 1169 AATACATCTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTT 1110 Query 18510 CGGGATAT-TGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | || ||| |||| ||| || ||||||| | ||| ||| || |||| ||||| ||| Sbjct 1109 CTGG-TATCTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCA 1051 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG 18628 | | || |||||||| | |||| |||||| |||| | |||||| || || | || Sbjct 1050 GATGCCGCAAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTG 991 Query 18629 TT---CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 || ||||||| |||| | || ||||||||| || | ||||||||| ||| Sbjct 990 TTTTCCCATTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCC 931 Query 18686 TCGGCCTGTTTGTACATTT 18704 || || ||| ||||||| Sbjct 930 TCTGCTAATTTATACATTT 912 >seq2381 Length=3349 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||| | || ||||| || ||||| ||||| || ||| || Sbjct 870 AATGCAAATCTTTGTCAAGACACTCACAGGAAAGACAATTACTTTAGAGGTAGAACCATC 811 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || ||| |||||| || || |||||||| ||||| ||||| || Sbjct 810 AGATACCATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATACCACCAGATCA 751 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||| | |||| ||| ||||| || || ||||| |||| | || || || || Sbjct 750 ACAAAGACTTATTTTTGCTGGTAAACAACTTGAAGACGGAAGAAGCCTTTCTGACTACAA 691 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| || |||||||| || ||||||||||||| || Sbjct 690 CATCCAAAAAGAAAGTACCCTTCATTTGGTTCTAAGATTAAGAGGAGG 643 >seq7557 Length=3014 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||| | || ||||| || ||||| ||||| || ||| || Sbjct 2557 AATGCAAATCTTTGTCAAGACACTCACAGGAAAGACAATTACTTTAGAGGTAGAACCATC 2498 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || ||| |||||| || || |||||||| ||||| ||||| || Sbjct 2497 AGATACCATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATACCACCAGATCA 2438 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||| | |||| ||| ||||| || || ||||| |||| | || || || || Sbjct 2437 ACAAAGACTTATTTTTGCTGGTAAACAACTTGAAGACGGAAGAAGCCTTTCTGACTACAA 2378 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| || ||||||| || ||||||||||||| || Sbjct 2377 CATCCAAAAAGAAAGTACCATTCATTTGGTTCTAAGATTAAGAGGAGG 2330 >seq7574 Length=465 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||| | || ||||| || ||||| ||||| || ||| || Sbjct 428 AATGCAAATCTTTGTCAAGACACTCACAGGAAAGACAATTACTTTAGAGGTAGAACCATC 369 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || ||| |||||| || || |||||||| ||||| ||||| || Sbjct 368 AGATACCATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATACCACCAGATCA 309 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||| | || | ||| || || ||||| |||| | | || || || || Sbjct 308 ACAAAGACTTATAAAAAAAAATAAACAACTTGAAGACGGAAGAAGTCTTTCTGACTACAA 249 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| || |||||||| || ||||||||||||| || Sbjct 248 CATCCAAAAAGAAAGTACCCTTCATTTGGTTCTAAGATTAAGAGGAGG 201 >seq166 Length=1757 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 18151 TAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAA 18210 ||| | ||| |||||||||||||| |||| ||||| || ||||||||||| ||| ||| Sbjct 296 TAAAAGACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAA 237 Query 18211 CGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGA 18270 || | || ||||| | |||||||| ||||||||||| || || || || ||| Sbjct 236 TGTAAGACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACT 177 Query 18271 AAAGAATATACCCTCAAC 18288 |||||| || || || || Sbjct 176 AAAGAAAATTCCTTCTAC 159 >seq8103 Length=650 Score = 89.7 bits (98), Expect = 8e-13 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 18151 TAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAA 18210 ||| | ||| |||||||||||||| ||| |||||||| ||||||||| | ||| ||| Sbjct 177 TAAAAGACATGCAAAATCAGTGTG-GCACCCTCATCTCTTGATATTAATACATTAGAAAA 119 Query 18211 CGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGC---GAAACTACT 18267 || | || ||||| | |||||||| ||||||||||| || || || | | ||||| Sbjct 118 TGTAAGACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACT 59 Query 18268 AGAAAAG 18274 | ||||| Sbjct 58 AAAAAAG 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731794906433200