Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1856 199 8e-46 seq7557 132 9e-26 seq2381 132 9e-26 seq166 123 5e-23 seq8103 102 2e-16 seq7574 98.7 2e-15 >seq1856 Length=1984 Score = 199 bits (220), Expect = 8e-46 Identities = 518/788 (66%), Gaps = 21/788 (3%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA-TA 49650 |||||||||||| ||||| || || |||| |||| | | ||| | || | || Sbjct 1687 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGC-CAAGCCAAGATTTACCAGTA 1629 Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710 || ||| || ||| | | ||||||||| ||||| | ||||||| || | || | Sbjct 1628 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 1569 Query 49711 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat-- 49768 | | | | ||| || |||||||| ||||| ||| || ||| |||| || Sbjct 1568 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATTT 1509 Query 49769 cataattatattattttttgataatttatatttaatatgattcgcatatattaaACATGC 49828 | || ||| ||| ||| |||||| || | |||| | | || | |||||| Sbjct 1508 CGTAG--ATACGATTAGCCGATGATTTATTTTGCAAATGA---GAGTGTAAAAGACATGC 1454 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 ||||||||| || ||||||| || || ||||| ||||||||| ||| || | ||||| Sbjct 1453 AAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAGACCTGG 1394 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 49948 ||| |||||||| || || |||||||| || || ||||| ||| |||||| || || Sbjct 1393 CATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCC 1334 Query 49949 CTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCA 50008 || ||| ||||| || |||| || | | ||| | | | | ||| | | Sbjct 1333 TTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATCTGAAGC-AATGT--A 1277 Query 50009 ATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 |||| ||||| || || ||||| ||| |||||| || | || ||||||| Sbjct 1276 TTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAAATAG 1217 Query 50069 TTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGA 50128 ||| || || | || | ||||||||||| ||||| Sbjct 1216 CCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGAATACATCTCAGA 1157 Query 50129 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAAC 50188 ||| | |||||||||||||||| || ||||||||| ||||||||||| |||||| Sbjct 1156 ATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTATCTGAAC 1097 Query 50189 TTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAA 50248 || |||| | || | | ||| || ||||||||||||||||| || || || Sbjct 1096 CTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGCAAAAAA 1037 Query 50249 TGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA---ATTTTCCCAAGATTC 50305 ||| | || | ||||||||||| | |||||| || || || ||||||| |||| Sbjct 1036 TGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCC---ATTC 980 Query 50306 AA---GATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTT 50362 || ||| | |||||| ||||| || |||||||||| ||| | | | | ||| Sbjct 979 AAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAATTT 920 Query 50363 ATACAttt 50370 |||||||| Sbjct 919 ATACATTT 912 >seq7557 Length=3014 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | | || || ||||| | ||| ||||| ||| || || ||||| Sbjct 2330 CCTCCTCTTAATCTTAGAACCAAATGAATGGTACTTTCTTTTTGGATGTTGTAGTCAGAA 2389 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | | || || | ||||||||||||||| || | ||| |||||||| |||||| Sbjct 2390 AGGCTTCTTCCGTCTTCAAGTTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGT 2449 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| || || |||||| ||| ||||| || | |||||| | |||||| Sbjct 2450 ATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATGGTATCTGATGGTTCTACC 2509 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||| |||||| || || || || | ||| || | ||| || |||||| Sbjct 2510 TCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATT 2557 >seq2381 Length=3349 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | | || || ||||| | ||| ||||| ||| || || ||||| Sbjct 643 CCTCCTCTTAATCTTAGAACCAAATGAAGGGTACTTTCTTTTTGGATGTTGTAGTCAGAA 702 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | | || || | ||||||||||||||| || | ||| |||||||| |||||| Sbjct 703 AGGCTTCTTCCGTCTTCAAGTTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGT 762 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| || || |||||| ||| ||||| || | |||||| | |||||| Sbjct 763 ATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATGGTATCTGATGGTTCTACC 822 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||| |||||| || || || || | ||| || | ||| || |||||| Sbjct 823 TCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATT 870 >seq166 Length=1757 Score = 123 bits (136), Expect = 5e-23 Identities = 260/383 (68%), Gaps = 9/383 (2%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA-TA 49650 |||||||||||| ||||| || || |||| |||| | | ||| | || | || Sbjct 518 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGC-CAAGCCAAGATTTACCAGTA 460 Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710 || ||| || ||| | | ||||||||| ||||| | ||||||| || | || | Sbjct 459 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 400 Query 49711 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat-- 49768 | | | | ||| || |||||||| ||||| ||| || ||| |||| || Sbjct 399 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATTT 340 Query 49769 cataattatattattttttgataatttatatttaatatgattcgcatatattaaACATGC 49828 | || ||| ||| ||| |||||| || | |||| | | || | |||||| Sbjct 339 CGTAG--ATACGATTAGCCGATGATTTATTTTGCAAATGA---GAGTGTAAAAGACATGC 285 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 ||||||||| || ||||||| || || ||||| ||||||||| ||| || | ||||| Sbjct 284 AAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAGACCTGG 225 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 49948 ||| |||||||| || || |||||||| || || ||||| ||| |||||| || || Sbjct 224 CATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCC 165 Query 49949 CTCGACACACGCAAATGCTATTA 49971 || ||| ||||| || |||| Sbjct 164 TTCTACAGCTGCAAAGGCGATTA 142 >seq8103 Length=650 Score = 102 bits (112), Expect = 2e-16 Identities = 240/355 (68%), Gaps = 13/355 (4%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA-TAATA 49650 |||||||||||| ||||| || || |||| |||| | | ||| | || | || Sbjct 399 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGC-CAAGCCAAGATTTACCAGTA 341 Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710 || ||| || ||| | | ||||||||| ||||| | ||||||| || | || | Sbjct 340 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 281 Query 49711 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat--tat 49768 | | | | ||| || |||||||| ||||| ||| || ||| |||| | | Sbjct 280 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATTT 221 Query 49769 cataattatattattttttgataatttatatttaatatgattcgcatatattaaACATGC 49828 | || ||| ||| ||| |||||| || | |||| | | || | |||||| Sbjct 220 CGTA--GATACGATTAGCCGATGATTTATTTTGCAAATGA---GAGTGTAAAAGACATGC 166 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 ||||||||| || |||||| || || ||||| ||| ||||| ||| || | ||||| Sbjct 165 AAAATCAGTGTG-GCACCCTCATCTCTTGATATTAATACATTAGAAAATGTAAGACCTGG 107 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAG 49940 ||| |||||||| || || |||||||| || || |||| | |||||| ||||| Sbjct 106 CATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAAAAG 52 >seq7574 Length=465 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 192411 TCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 192470 ||| |||||||| ||||||||||||||||| || || |||||| ||| ||||| || Sbjct 302 TCTTTGTTGATCTGGTGGTATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAAT 361 Query 192471 AGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATAT 192530 | |||||| | |||||| |||| |||||| || || || || | ||| || | ||| || Sbjct 362 GGTATCTGATGGTTCTACCTCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGAT 421 Query 192531 CTGCATT 192537 |||||| Sbjct 422 TTGCATT 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984373704771450