Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1856 176 8e-39 seq166 138 2e-27 seq7557 127 4e-24 seq2381 127 4e-24 seq8103 116 7e-21 seq7574 95.1 2e-14 >seq1856 Length=1984 Score = 176 bits (194), Expect = 8e-39 Identities = 546/851 (64%), Gaps = 27/851 (3%) Strand=Plus/Minus Query 38834 TTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATT 38893 ||| || || | ||| | || || |||||||| ||||||||| ||| || || | Sbjct 1747 TTGATACTCTGCAACAATNTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 1688 Query 38894 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA-TA 38952 |||||||||||| ||||| || || |||| |||| | | ||| | || | || Sbjct 1687 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGC-CAAGCCAAGATTTACCAGTA 1629 Query 38953 ATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATT 39012 || ||| || ||| | | ||||||||| |||| | ||||||| || | || | Sbjct 1628 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 1569 Query 39013 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat-- 39070 | | | | ||| || |||||||| ||||| ||| || ||| |||| || Sbjct 1568 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATTT 1509 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130 | || ||| ||| ||| |||||| || | |||| | | || | |||||| Sbjct 1508 CGTAG--ATACGATTAGCCGATGATTTATTTTGCAAATGA---GAGTGTAAAAGACATGC 1454 Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190 |||||| || || |||| || || || ||||| ||||||||| ||| || | ||||| Sbjct 1453 AAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAGACCTGG 1394 Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 39250 ||| |||||||| || || |||||||| || || ||||| ||| |||||| || || Sbjct 1393 CATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCC 1334 Query 39251 CTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA---AT 39307 || ||| ||||| || |||| || | | ||| | |||| || || Sbjct 1333 TTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGA------ATCTGAAGCAAT 1280 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 | |||| ||||| || || ||||| ||| |||||| || | || ||||| Sbjct 1279 GTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAAA 1220 Query 39368 TAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTC 39427 || || ||||||||| || Sbjct 1219 TAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGAATACATCTC 1160 Query 39428 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTG 39487 |||||| | |||||||||||||||| || ||||||||| |||||||||| ||| Sbjct 1159 AGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTATCTG 1100 Query 39488 AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 39547 ||| || |||| | || | | ||| || ||||||||||||||||| || || Sbjct 1099 AACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGCAAA 1040 Query 39548 GAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAA---ATTTTCCCAAGA 39604 ||||| | |||| ||||||||||| | |||||| || || || ||||||| | Sbjct 1039 AAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCC---A 983 Query 39605 TTCAA---GATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTT 39661 ||||| ||| | |||||| ||||| || |||||||||| ||| | | | | Sbjct 982 TTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAA 923 Query 39662 TTTATACATTT 39672 ||||||||||| Sbjct 922 TTTATACATTT 912 >seq166 Length=1757 Score = 138 bits (152), Expect = 2e-27 Identities = 299/443 (67%), Gaps = 9/443 (2%) Strand=Plus/Minus Query 38834 TTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATT 38893 ||| || || | ||| || || || |||||||| ||||||||| ||| || || | Sbjct 578 TTGATACTCTGCAACCTTCTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 519 Query 38894 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA-TA 38952 |||||||||||| ||||| || || |||| |||| | | ||| | || | || Sbjct 518 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGC-CAAGCCAAGATTTACCAGTA 460 Query 38953 ATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATT 39012 || ||| || ||| | | ||||||||| |||| | ||||||| || | || | Sbjct 459 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 400 Query 39013 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat-- 39070 | | | | ||| || |||||||| ||||| ||| || ||| |||| || Sbjct 399 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATTT 340 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130 | || ||| ||| ||| |||||| || | |||| | | || | |||||| Sbjct 339 CGTAG--ATACGATTAGCCGATGATTTATTTTGCAAATGA---GAGTGTAAAAGACATGC 285 Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190 |||||| || || |||| || || || ||||| ||||||||| ||| || | ||||| Sbjct 284 AAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAGACCTGG 225 Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 39250 ||| |||||||| || || |||||||| || || ||||| ||| |||||| || || Sbjct 224 CATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCC 165 Query 39251 CTCCACACACGCAAATGCTATTA 39273 || ||| ||||| || |||| Sbjct 164 TTCTACAGCTGCAAAGGCGATTA 142 >seq7557 Length=3014 Score = 127 bits (140), Expect = 4e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | |||||||||||||||||| | ||| ||||| || |||||||||||||||| Sbjct 2400 CGTCTTCAAGTTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGTATTCCTTCTT 2459 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || |||||| ||| ||||| || |||||||| | |||||| |||| ||||| Sbjct 2460 TGTCCTGAATTTTAGCTTTGACATTCTCAATGGTATCTGATGGTTCTACCTCTAAAGTAA 2519 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || || || || | ||| || | || || |||||| Sbjct 2520 TTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATT 2557 >seq2381 Length=3349 Score = 127 bits (140), Expect = 4e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | |||||||||||||||||| | ||| ||||| || |||||||||||||||| Sbjct 713 CGTCTTCAAGTTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGTATTCCTTCTT 772 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || |||||| ||| ||||| || |||||||| | |||||| |||| ||||| Sbjct 773 TGTCCTGAATTTTAGCTTTGACATTCTCAATGGTATCTGATGGTTCTACCTCTAAAGTAA 832 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || || || || | ||| || | || || |||||| Sbjct 833 TTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATT 870 >seq8103 Length=650 Score = 116 bits (128), Expect = 7e-21 Identities = 279/415 (67%), Gaps = 13/415 (3%) Strand=Plus/Minus Query 38834 TTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATT 38893 ||| || || | ||| || || || |||||||| ||||||||| ||| || || | Sbjct 459 TTGATACTCTGCAACCTTCTTCTCAAAAAAGTTAGTTTTTCCTCTTAAAGAGATATTCTC 400 Query 38894 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA-TAATA 38952 |||||||||||| ||||| || || |||| |||| | | ||| | || | || Sbjct 399 CATAAAATCAAAAGGATTATTTACTTTGTAATGTTTTGC-CAAGCCAAGATTTACCAGTA 341 Query 38953 ATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATT 39012 || ||| || ||| | | ||||||||| |||| | ||||||| || | || | Sbjct 340 ATACATCCGCAACATACTTAACATATTGCGACATAAGAGATGAATTCATTCCAAGCAAAT 281 Query 39013 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat--tat 39070 | | | | ||| || |||||||| ||||| ||| || ||| |||| | | Sbjct 280 CTACTTTAAGGGAATCTCTAACAAATTCTTCTTCTAATTCAACTGCTGAAGTAATGATTT 221 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130 | || ||| ||| ||| |||||| || | |||| | | || | |||||| Sbjct 220 CGTA--GATACGATTAGCCGATGATTTATTTTGCAAATGA---GAGTGTAAAAGACATGC 166 Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190 |||||| || || ||| || || || ||||| ||| ||||| ||| || | ||||| Sbjct 165 AAAATCAGTGTG-GCACCCTCATCTCTTGATATTAATACATTAGAAAATGTAAGACCTGG 107 Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAG 39242 ||| |||||||| || || |||||||| || || |||| | |||||| ||||| Sbjct 106 CATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAAAAG 52 >seq7574 Length=465 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 ||| ||||| || ||||||||||||||||| || || |||||| ||| ||||| || Sbjct 302 TCTTTGTTGATCTGGTGGTATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAAT 361 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 |||||||| | |||||| |||| |||||| || || || || | ||| || | || || Sbjct 362 GGTATCTGATGGTTCTACCTCTAAAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGAT 421 Query 172064 CTGCATT 172070 |||||| Sbjct 422 TTGCATT 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905040655236600