Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq1083 89.7 7e-13 seq233 89.7 7e-13 >seq1083 Length=2713 Score = 89.7 bits (98), Expect = 7e-13 Identities = 237/361 (66%), Gaps = 22/361 (6%) Strand=Plus/Plus Query 165970 TGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAAAATTTATGTGAAACTAT 166029 ||| |||||| | || |||| | |||| | || || || |||||| ||||| Sbjct 1191 TGGTTATGTTTCTGAGCAAAGTGCTTATCATCACGGAGACACTTCGTTATGTTCGACTAT 1250 Query 166030 AATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTACTTGAACCTGATGG 166089 ||| | || ||| ||||||||||| |||||||||| ||| | | || || || Sbjct 1251 TATTTCTATGGCACAAAATTTTGTTGGTTCAAATAATATTAACTTATTACAGCCAGAAGG 1310 Query 166090 TCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGCATCAAGATATATTTATAC 166149 ||||||||||| |||||| || ||||||||| | || ||| ||||||| | |||| Sbjct 1311 TCAATTTGGTAGCAGATTGAGTGGTGGTAAAGATGCAGCAGCAGCAAGATACTTGCATAC 1370 Query 166150 ----CAAACCACATAAAATATTAAAATATATATTTAGA-GAAGAAGATGACCCTATTTTA 166204 | || | | | | |||| || ||| || ||| ||||||| | | ||| Sbjct 1371 TTGTCTTACTCCTTTAGCTTTTAAGAT-----TTTTGATGAAAAAGATGAAGCGTTGTTA 1425 Query 166205 AATTAT---ACTGTTGAGGG---------TGAACCTATTCATTTTATTCCAGTAATCCCA 166252 |||||| | || || || |||||| | | ||||||||| | | || Sbjct 1426 AATTATCTGAATGAAGATGGCAAAAACATTGAACCAGATTACTTTATTCCAATTGTTCCT 1485 Query 166253 TTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTCATGTTTTATACCTCAA 166312 | ||||| | ||||| || |||||||||||||| ||| ||||||||| ||| Sbjct 1486 ATGGTTTTAGTCAATGGAACTGAAGGTATTGGAACAGGCTGGAGTACTTTTATACCCCAA 1545 Query 166313 T 166313 | Sbjct 1546 T 1546 >seq233 Length=4434 Score = 89.7 bits (98), Expect = 7e-13 Identities = 212/314 (68%), Gaps = 15/314 (5%) Strand=Plus/Minus Query 172518 AGAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAA 172577 |||| ||| || |||||||| || |||| || ||||||||| ||||| || ||| | Sbjct 1725 AGAAGAGAGGGGGATTTAGGTCCTGTTTACGGCTTTCAATGGCGACATTATGGTGCTAAT 1666 Query 172578 TATATCGAC-TGTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAAC--T 172634 |||| |||| ||||| ||| || | ||||| | || || || | ||| | Sbjct 1665 TATA-CGACCTGTGAAGAAGACTATTCCAATAAAGGAATTGATCAGTT--GCAAAATGTT 1609 Query 172635 ATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTT---GGAAT 172691 |||||| || | || || ||||| || ||||| ||||||| | || ||||| Sbjct 1608 ATTAATGAGATAAAGAATAATCCAGATAGCAGAAGA---TTAATTGTTGTTTCATGGAAT 1552 Query 172692 GTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTC 172751 | || ||| | | |||| | | ||||| |||||| ||| || ||| |||| Sbjct 1551 CCAATACAGCTTAAAGAGATGGCTTTGCCTCCATGCCATTTATTATTCCAGTTTAATGTT 1492 Query 172752 AGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGG 172811 | ||| || | || ||||| |||||||||||||||| |||| | ||||| || Sbjct 1491 ACAAATGGAT---TTTTGAATTGTGCTTTATATCAAAGATCAGGTGATGTTGGATTAGGT 1435 Query 172812 GTACCTTATAATAT 172825 |||||| |||||| Sbjct 1434 ATACCTTTTAATAT 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632422975126760