Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1083 86.0 8e-12 seq7255 82.4 1e-10 seq233 82.4 1e-10 >seq1083 Length=2713 Score = 86.0 bits (94), Expect = 8e-12 Identities = 236/361 (65%), Gaps = 22/361 (6%) Strand=Plus/Plus Query 163018 TGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAAAATTTATGTGAAACTAT 163077 ||| |||||| | || |||| | ||| | ||||| || |||||| ||||| Sbjct 1191 TGGTTATGTTTCTGAGCAAAGTGCTTATCATCACGGAGACACTTCGTTATGTTCGACTAT 1250 Query 163078 AATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTACTTGAACCTGATGG 163137 ||| | || ||| ||||||||||| |||||||||| ||| | | || || || Sbjct 1251 TATTTCTATGGCACAAAATTTTGTTGGTTCAAATAATATTAACTTATTACAGCCAGAAGG 1310 Query 163138 TCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGCATCAAGATATATTTATAC 163197 ||||||||||| |||||| || ||||||||| | || ||| ||||||| | |||| Sbjct 1311 TCAATTTGGTAGCAGATTGAGTGGTGGTAAAGATGCAGCAGCAGCAAGATACTTGCATAC 1370 Query 163198 ----CAAACCAAATAAAATATTAAAATATATATTTAGA-GAAGAAGATGACCCTATTTTA 163252 | || | | | |||| || ||| || ||| ||||||| | | ||| Sbjct 1371 TTGTCTTACTCCTTTAGCTTTTAAGAT-----TTTTGATGAAAAAGATGAAGCGTTGTTA 1425 Query 163253 AATTAT---ACTGTTGAGGG---------TGAACCTGTTCATTTTATCCCAGTGATTCCA 163300 |||||| | || || || |||||| | | | ||||| ||| | |||| Sbjct 1426 AATTATCTGAATGAAGATGGCAAAAACATTGAACCAGATTACTTTATTCCAATTGTTCCT 1485 Query 163301 TTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTCATGTTTTATCCCTCAA 163360 | ||||| | ||||| || |||||||||||||| ||| |||||| || ||| Sbjct 1486 ATGGTTTTAGTCAATGGAACTGAAGGTATTGGAACAGGCTGGAGTACTTTTATACCCCAA 1545 Query 163361 T 163361 | Sbjct 1546 T 1546 >seq7255 Length=3735 Score = 82.4 bits (90), Expect = 1e-10 Identities = 135/194 (70%), Gaps = 12/194 (6%) Strand=Plus/Minus Query 51856 AAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 51915 ||||||| || ||||||| ||| |||| |||| || || ||||||| | |||||| Sbjct 2383 AAAGACACATGTTGGATGGAGATTATGTTTTATTTAACAGACAACCAAGTTTACATAAAA 2324 Query 51916 CTTCTATG------CAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGA 51969 |||||| || || ||||||| ||| || | || ||||||| | | | Sbjct 2323 TGTCTATGATGGCACACAGAGTTAAAGT---AATGGAA---GGAATCACATTTAGACTTA 2270 Query 51970 ATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATG 52029 || | || ||| | | || ||||| ||||||||||| |||||||||||| | ||| Sbjct 2269 ATCTTTCTGCCACTTCACCCTACAATGCAGATTTTGATGGTGATGAAATGAATATGCATA 2210 Query 52030 TTCCTCAATCATAT 52043 | || ||||| ||| Sbjct 2209 TGCCACAATCTTAT 2196 >seq233 Length=4434 Score = 82.4 bits (90), Expect = 1e-10 Identities = 228/344 (66%), Gaps = 18/344 (5%) Strand=Plus/Minus Query 168615 GAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTAT 168674 || ||||| ||| | ||| ||||| |||| ||| || ||||||||||| |||| Sbjct 1752 GAGTTTTTCGATAAACAAGGTATTACC---AGAAGAGAGGGGGATTTAGGTCCTGTTTAC 1696 Query 168675 GGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACAGATTACACCGGA 168734 || ||||||||| ||||| || ||| | |||| |||||| ||| || || Sbjct 1695 GGCTTTCAATGGCGACATTATGGTGCTAATTATACGACCTGTGAAGAAGACTATTCCAAT 1636 Query 168735 CAAGGAGTAGACCAATTAAGTCAAAC--TATAAATACTTTACACAACAATCCGGAAAATA 168792 ||||| | || || || | ||| ||| ||| || | || ||||| || || Sbjct 1635 AAAGGAATTGATCAGTT--GCAAAATGTTATTAATGAGATAAAGAATAATCCAGA---TA 1581 Query 168793 GAAGAATATTAATTAATAGTT---GGGATGTACCACAACTTGATAAAATGGTTCTTCCCC 168849 | |||| ||||||| | || || || | ||| ||| | | |||| | | || | Sbjct 1580 GCAGAAGATTAATTGTTGTTTCATGGAATCCAATACAGCTTAAAGAGATGGCTTTGCCTC 1521 Query 168850 CTTGTCACACTTTAGTGCAATTTTATGTAAGGAAAAAATCAATCTTAGA-TTGTCAGTTG 168908 | || || ||| | || ||| |||| | |||| || || || |||| || Sbjct 1520 CATGCCATTTATTATTCCAGTTTAATGTTAC----AAATGGATTTTTGAATTGTGCTTTA 1465 Query 168909 TATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTATAATAT 168952 ||||||||||||| |||| | |||||||| |||||| |||||| Sbjct 1464 TATCAAAGATCAGGTGATGTTGGATTAGGTATACCTTTTAATAT 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635110691979560