Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq5717 105 9e-18 seq4179 104 3e-17 seq233 93.3 6e-14 >seq5717 Length=1870 Score = 105 bits (116), Expect = 9e-18 Identities = 158/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 201866 GACAGGAGGAGAAACAATGTATTGTGGTTTTACCGGAAGAAAAATTCAAAGTAAAATTTT 201925 || |||| |||| ||||||||||||||||| || |||| | ||| |||| || Sbjct 466 GAGAGGATTAGAAGTTATGTATTGTGGTTTTACAGGTCGAAAGTTGCAAGCACAAATATT 407 Query 201926 TATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAG 201985 |||||||||||||||||||| | | || ||||||||| |||||||||||||||| || Sbjct 406 CATAGGCCCAACATACTATCAAAGATTAAAGCATATGGTTGAGGATAAAATGCATGCAAG 347 Query 201986 AAGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGT----GGTCGGTCCCAAG 202041 | || | || |||| ||| | | || || |||| || |||| || Sbjct 346 AGCAAGAGGACCTGT-ACAA-ATTTTAAC--CANACAGCCTGTGGAAGGAAGGTCTAGAG 291 Query 202042 GTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATT 202082 || || ||| | |||||||||||||| | |||||||||| Sbjct 290 AGGGAGGGTTACGTTTTGGAGAAATGGAGAGAGATTGTATT 250 >seq4179 Length=1231 Score = 104 bits (114), Expect = 3e-17 Identities = 158/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 201866 GACAGGAGGAGAAACAATGTATTGTGGTTTTACCGGAAGAAAAATTCAAAGTAAAATTTT 201925 || |||| |||| ||||||||||||||||| || |||| | ||| |||| || Sbjct 153 GAGAGGATTAGAAGTTATGTATTGTGGTTTTACAGGTCGAAAGTTGCAAGCACAAATATT 212 Query 201926 TATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAG 201985 |||||||||||||||||||| | | || ||||||||| |||||||||||||||| || Sbjct 213 CATAGGCCCAACATACTATCAAAGATTAAAGCATATGGTTGAGGATAAAATGCATGCAAG 272 Query 201986 AAGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGT----GGTCGGTCCCAAG 202041 | || | || |||| ||| | | || || |||| || |||| || Sbjct 273 AGCAAGAGGACCTGT-ACAA-ATTTTAAC--CAGACAGCCTGTGGAAGGAAGGTCTAGAG 328 Query 202042 GTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATT 202082 || || ||| | |||||||||||||| | |||||||||| Sbjct 329 AGGGAGGGTTACGTTTTGGAGAAATGGAGAGAGATTGTATT 369 >seq233 Length=4434 Score = 93.3 bits (102), Expect = 6e-14 Identities = 210/313 (67%), Gaps = 7/313 (2%) Strand=Plus/Minus Query 180546 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 180605 ||| ||| || |||||||| || |||| || ||||||||| ||||| || ||| | | Sbjct 1724 GAAGAGAGGGGGATTTAGGTCCTGTTTACGGCTTTCAATGGCGACATTATGGTGCTAATT 1665 Query 180606 ATATTGACTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAA--GTTAT 180663 ||| |||||| ||||| | |||| || || || || || || ||||| Sbjct 1664 ATACGACCTGTGAAGAAGACTATTCCAATAAAGGAATTGATCAGTT--GCAAAATGTTAT 1607 Query 180664 AGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGTTGGAATGTATC 180723 | ||||| |||||||| || || ||||| |||| | | | |||||| | Sbjct 1606 TAATGAGATAAAGAATAATCCAGATAGCAGAAGATTAATTGTTGTTTCATGGAATCCAAT 1547 Query 180724 ACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAA 180783 ||| | ||| |||||| | || ||||| || | || | || ||| |||||| ||| Sbjct 1546 ACAGCTTAAAGAGATGGCTTTGCCTCCATGCCATTTATTATTCCAGTTTAATGTTACAAA 1487 Query 180784 TAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACC 180843 | | ||| | |||| || ||||||||||| | ||| | ||||||||| |||| Sbjct 1486 TGGATTTT---TGAATTGTGCTTTATATCAAAGATCAGGTGATGTTGGATTAGGTATACC 1430 Query 180844 ATATAATATTGCT 180856 | |||||| ||| Sbjct 1429 TTTTAATATAGCT 1417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655210974443000