Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1083 84.2 3e-11 seq233 84.2 3e-11 >seq1083 Length=2713 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 165180 TGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACAAAATTTATGTGAAACTAT 165239 ||| |||||| | || |||| | |||| | || || || |||||| ||||| Sbjct 1191 TGGTTATGTTTCTGAGCAAAGTGCTTATCATCACGGAGACACTTCGTTATGTTCGACTAT 1250 Query 165240 AATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTACTTGAACCTGATGG 165299 ||| | || ||| ||||||||||| |||||||||| ||| | | || || || Sbjct 1251 TATTTCTATGGCACAAAATTTTGTTGGTTCAAATAATATTAACTTATTACAGCCAGAAGG 1310 Query 165300 TCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGCATCAAGATA 165350 ||||||||||| |||||| || ||||||||| | || ||| ||||||| Sbjct 1311 TCAATTTGGTAGCAGATTGAGTGGTGGTAAAGATGCAGCAGCAGCAAGATA 1361 >seq233 Length=4434 Score = 84.2 bits (92), Expect = 3e-11 Identities = 211/314 (67%), Gaps = 15/314 (5%) Strand=Plus/Minus Query 171730 AGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAA 171789 |||| ||| || ||||||||||| |||| || ||||||||| ||||| || ||| | Sbjct 1725 AGAAGAGAGGGGGATTTAGGTCCTGTTTACGGCTTTCAATGGCGACATTATGGTGCTAAT 1666 Query 171790 TATATCGAC-TGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAAC--T 171846 |||| |||| ||| | ||| || | ||||| | || || || | ||| | Sbjct 1665 TATA-CGACCTGTGAAGAAGACTATTCCAATAAAGGAATTGATCAGTT--GCAAAATGTT 1609 Query 171847 ATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTT---GGAAT 171903 |||||| || | || || ||||| || ||||| ||||||| | || ||||| Sbjct 1608 ATTAATGAGATAAAGAATAATCCAGATAGCAGAAGA---TTAATTGTTGTTTCATGGAAT 1552 Query 171904 GTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTC 171963 | || ||| | | |||| | | ||||| ||||| ||| || ||| |||| Sbjct 1551 CCAATACAGCTTAAAGAGATGGCTTTGCCTCCATGCCATTTATTATTCCAGTTTAATGTT 1492 Query 171964 AGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGG 172023 | ||| || | || ||||| |||||||||||||||| |||| | ||||| || Sbjct 1491 ACAAATGGAT---TTTTGAATTGTGCTTTATATCAAAGATCAGGTGATGTTGGATTAGGT 1435 Query 172024 GTACCTTATAATAT 172037 |||||| |||||| Sbjct 1434 ATACCTTTTAATAT 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628464992094720