Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7255 107 5e-18 seq1856 96.9 8e-15 seq6159 89.7 1e-12 seq2511 89.7 1e-12 seq8038 87.8 4e-12 seq3623 87.8 4e-12 seq2573 87.8 4e-12 seq2052 87.8 4e-12 >seq7255 Length=3735 Score = 107 bits (118), Expect = 5e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| | || || || |||||| | |||||||||||||||||||| || | | Sbjct 2363 GATTATGTTTTATTTAACAGACAACCAAGTTTACATAAAATGTCTATGATGGCACACAGA 2304 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAAT 305443 || |||||| | ||| | |||||| || | ||| | ||| | | || || ||| Sbjct 2303 GTTAAAGTAATGGAAGGAATCACATTTAGACTTAATCTTTCTGCCACTTCACCCTACAAT 2244 Query 305444 GCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || ||||||||||| |||||||||||||||||| | || ||||| Sbjct 2243 GCAGATTTTGATGGTGATGAAATGAATATGCATATGCCACAATC 2200 >seq1856 Length=1984 Score = 96.9 bits (106), Expect = 8e-15 Identities = 302/458 (66%), Gaps = 11/458 (2%) Strand=Plus/Plus Query 131553 ATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTA 131612 |||||| | ||||| || | || || ||||| || || | | |||||| ||||||| Sbjct 1005 ATGAAAGAAATTTTATTAAACATGTACTCGCATTTTTTGCGGCATCTGATGGTATTGTTA 1064 Query 131613 TTGAAAATCTTGTTATTAATTTCATTCAAGAAA--TTGATATTCCTGAAGTAACATCGTT 131670 | |||||||| | | | | || | |||| | || | || || |||| || | | || Sbjct 1065 TGGAAAATCTGGCTGTAAGATT--TGCAAGTGAGGTTCAGATACCAGAAGCAAGAGCATT 1122 Query 131671 CTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGA 131730 || | || ||| ||| | ||| || ||| ||||||||||| || | ||||| Sbjct 1123 TTATTCCTTCCAAATAGCTATGGAAGTAATCCATTCTGAGATGTATTCTTTGCTTATTGA 1182 Query 131731 GAGTCTTG-TTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTC 131789 ||| ||| || || || || || |||| ||||| |||| || | | | | Sbjct 1183 -AGTGTTGGTTTCTGATTCTGAAGAGAAGAATAGGCTATTTAATGCAGTTTCAACAATAC 1241 Query 131790 CTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATT 131849 || | | | || || || |||||||| | |||| ||| |||||| | || Sbjct 1242 CTATAGTCAGGAAAAAGGCCGAATGGGCATTAAAATACATTGCTTCAGATTCCCCC--TT 1299 Query 131850 TTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTC-AGGTGCTTTC 131908 | | | | | || | || ||||| ||| ||||| || |||||| || | |||| Sbjct 1300 TAGCGATAGG-CTAATCGCCTTTGCAGCTGTAGAAGGAATTTTCTTTAGTAGCTCCTTTG 1358 Query 131909 TGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAA 131968 | |||| |||||||| ||||| | ||||||||||| || || |||| || ||| || Sbjct 1359 CTT-CTATTTTTTGGCTAAAGAAAAGAGGATTGATGCCAGGTCTTACATTTTCTAATGAA 1417 Query 131969 TTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 || || || |||||||| | | || ||||| ||||| Sbjct 1418 TTAATATCAAGAGATGAGGGTTGCCACACTGATTTTGC 1455 >seq6159 Length=5147 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| |||| || | ||||||| | |||||||||||||||||||| || | | Sbjct 4469 GATTATGTTTTGTTTAACAAGCAACCAAGTTTACATAAAATGTCTATGATGGCACACAGA 4528 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAAT 305443 || |||||| | ||| | | |||| || | ||| | || | | || || ||| Sbjct 4529 GTTAAAGTAATGGAAGGAATCATATTTAGACTTAATCTTTCTGTCACTTCACCCTACAAT 4588 Query 305444 GCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || || |||||||| |||||||||||||||| | | | ||||| Sbjct 4589 GCAGACTTTGATGGTGATGAAATGAATATGCCTATGCTACAATC 4632 >seq2511 Length=3308 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| |||| || | ||||||| | |||||||||||||||||||| || | | Sbjct 538 GATTATGTTTTGTTTAACAAGCAACCAAGTTTACATAAAATGTCTATGATGGCACACAGA 597 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAAT 305443 || |||||| | ||| | | |||| || | ||| | || | | || || ||| Sbjct 598 GTTAAAGTAATGGAAGGAATCATATTTAGACTTAATCTTTCTGTCACTTCACCCTACAAT 657 Query 305444 GCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || || |||||||| |||||||||||||||| | | | ||||| Sbjct 658 GCAGACTTTGATGGTGATGAAATGAATATGCCTATGCTACAATC 701 >seq8038 Length=4416 Score = 87.8 bits (96), Expect = 4e-12 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||||| || || || ||||||| | | ||| ||||| |||||||| || Sbjct 3897 GTTTTATTTAATAGACAGCCTTCCCTGCATAGACTAAGTATAATGGCACATAAAGT--AA 3840 Query 305390 GTATT-ATCTGGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 | ||| || | | | ||| |||| |||| | ||| |||||| || || ||||| | Sbjct 3839 GAATTCATAAGAACAAAACCTTCAGATTCAATGAATGTGTTTGTACCCCCTACAATGCTG 3780 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGT 305478 | |||||||| |||||||||||||| ||||| Sbjct 3779 ACTTTGATGGTGATGAAATGAATATACATGT 3749 >seq3623 Length=361 Score = 87.8 bits (96), Expect = 4e-12 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||||| || || || ||||||| | | ||| ||||| |||||||| || Sbjct 138 GTTTTATTTAATAGACAGCCTTCCCTGCATAGACTAAGTATAATGGCACATAAAGT--AA 195 Query 305390 GTATT-ATCTGGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 | ||| || | | | ||| |||| |||| | ||| |||||| || || ||||| | Sbjct 196 GAATTCATAAGAACAAAACCTTCAGATTCAATGAATGTGTTTGTACCCCCTACAATGCTG 255 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGT 305478 | |||||||| |||||||||||||| ||||| Sbjct 256 ACTTTGATGGTGATGAAATGAATATACATGT 286 >seq2573 Length=8650 Score = 87.8 bits (96), Expect = 4e-12 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||||| || || || ||||||| | | ||| ||||| |||||||| || Sbjct 4076 GTTTTATTTAATAGACAGCCTTCCCTGCATAGACTAAGTATAATGGCACATAAAGT--AA 4019 Query 305390 GTATT-ATCTGGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 | ||| || | | | ||| |||| |||| | ||| |||||| || || ||||| | Sbjct 4018 GAATTCATAAGAACAAAACCTTCAGATTCAATGAATGTGTTTGTACCCCCTACAATGCTG 3959 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGT 305478 | |||||||| |||||||||||||| ||||| Sbjct 3958 ACTTTGATGGTGATGAAATGAATATACATGT 3928 >seq2052 Length=837 Score = 87.8 bits (96), Expect = 4e-12 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||||| || || || ||||||| | | ||| ||||| |||||||| || Sbjct 110 GTTTTATTTAATAGACAGCCTTCCCTGCATAGACTAAGTATAATGGCACATAAAGT--AA 167 Query 305390 GTATT-ATCTGGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 | ||| || | | | ||| |||| |||| | ||| |||||| || || ||||| | Sbjct 168 GAATTCATAAGAACAAAACCTTCAGATTCAATGAATGTGTTTGTACCCCCTACAATGCTG 227 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGT 305478 | |||||||| |||||||||||||| ||||| Sbjct 228 ACTTTGATGGTGATGAAATGAATATACATGT 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186684658709347