Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1856 203 4e-47 seq4813 154 2e-32 seq1148 140 4e-28 seq74 98.7 1e-15 seq166 91.5 2e-13 seq8103 86.0 9e-12 >seq1856 Length=1984 Score = 203 bits (224), Expect = 4e-47 Identities = 389/572 (68%), Gaps = 15/572 (3%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 ||||||||||| |||||||| ||||||||||| || || ||||| | || | || Sbjct 1437 CCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAGACCTGGCATCAATCCTCTTTTC 1378 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 || |||||||| || | |||||| || | | |||||| || |||||||| |||||||| Sbjct 1377 TTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCCTTCTACAGCTGCAAAG 1318 Query 39758 GCAACAAGTCTCTCTCC------GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAA 39811 || | || || || | | || || | || |||||| || |||||| Sbjct 1317 GCGATTAGCCTATCGCTAAAGGGGGAATCTGAAGCA--ATGTAT----TTTAATGCCCAT 1264 Query 39812 TCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCA 39871 || || || ||| | || ||| |||||| | |||||||| || || || || Sbjct 1263 TCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAAATAGCCTATTCTTCTCT 1204 Query 39872 TCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCA 39931 ||| ||| ||| | || || | || | |||||| || |||||||| ||| Sbjct 1203 TCAGAATCAGAAACCAACACTTCAATAAGCAAAGAATACATCTCAGAATGGATTACTTCC 1144 Query 39932 ATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAAT 39991 || || || || || ||||| ||||||||| | || || ||||| |||| Sbjct 1143 ATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTATCTGAACCTCACTTGCAAAT 1084 Query 39992 CTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGT 40051 ||| | |||| |||||| | || || |||||| || ||||||||||| | ||||||| Sbjct 1083 CTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGCAAAAAATGCGAGTACATGT 1024 Query 40052 TTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAGTCATTGATATCTTTTGAT 40108 |||||||||| | ||||||| ||||| || | ||| ||| |||| | | Sbjct 1023 TTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCATTCAAACTTATCAACAGTT 964 Query 40109 ATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATA 40168 | ||| ||||| |||| |||||||||||| ||||||| ||| ||||| | |||||| Sbjct 963 AAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAATTTATACATTTCCCATATT 904 Query 40169 TCACGATATTGTATTGGAAAAATAACAAATCT 40200 | | |||| || || || | |||||| || Sbjct 903 TTGGGGTATTTAATAGGGAACAAAACAAACCT 872 >seq4813 Length=2720 Score = 154 bits (170), Expect = 2e-32 Identities = 484/736 (66%), Gaps = 23/736 (3%) Strand=Plus/Minus Query 69279 TGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAG 69338 ||||| |||||||||||||| || || | | | | ||| || || |||| |||| Sbjct 2363 TGCTAAGTTACAAACTGCTACTTCGTTCTCACTGGTAAATTCTAAGATTTCTGCGCATAA 2304 Query 69339 ATTAC-TACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCT 69397 |||| | | ||| ||| ||| || |||| || || | ||||| |||||| ||| | Sbjct 2303 GTTACTTCCTTTTAATATTCCTAAG-TTTTTTTGGTTGTTTTTTTTATTACAGCTGTCTT 2245 Query 69398 TGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAA--- 69454 | |||||||| | |||||||| || || ||||| | ||| ||||| | | |||| | Sbjct 2244 TATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCTCTCCATAATT 2185 Query 69455 -CGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGC 69513 | || | ||| || | | | || || ||||| ||||||| ||||| Sbjct 2184 TCTGGGCTGGTATTCTTTTCCATACTTTA----TTTTCTTTCTCATATTTCTCATATAAA 2129 Query 69514 CGTTCGAATTCATCTCCCCAAACATCATCCAAT-CCAGGACATTCATTTGGACACATCAA 69572 || |||||||| || |||| ||| |||| || || | ||||||||| | || Sbjct 2128 TTATCAAATTCATCACCATAAACCTCAGACAATCCCTTTGCAAT-ATTTGGACAGAATAA 2070 Query 69573 TGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 |||| | |||| || | || ||||| |||| ||| |||| |||||| ||| | Sbjct 2069 ACACCAATCTTCATTTTCTTCCACCTTCTTCATGAATAAATCAGGAACCCAAAGTGCTGT 2010 Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 ||| | ||| |||| | ||||| |||||||| |||||| | | ||| | ||| || Sbjct 2009 AAAAATGNTTCTACTTCTCATCTCTTCTTTTCCTGTGTTTTTTCTTAAATCTAAAAATTC 1950 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | || || | ||||||||| || || | | || || | | || ||| ||||| Sbjct 1949 AAGTATTTCTGGATGCCATGGCTCAAGGAAAAATGCTATTGATGAAGCTCTTTTGTTTCC 1890 Query 69753 TCCCTGATCTATGTATCT-GGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCAT 69811 | || || || | | || || | | | | ||| | | ||| ||||| ||||||| Sbjct 1889 ACATTGTGAAATAAATTTAGACATTGCT-TCAAATACTTTTATCATAGGAATTATACCAT 1831 Query 69812 TAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATA 69871 | || | || |||| |||| | ||||| || | |||| | |||| | Sbjct 1830 TGGACGTTCCTCCTGTT---GAAAGGGGAGAGCCTCTGGCTCTGATATGAGAAATATTCA 1774 Query 69872 GACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATAC 69931 ||| ||||||||||||||||||| || | | ||| | | | ||| ||| | || | Sbjct 1773 CACCAATTCCTCCTGCCATTTTAGCTATGTGTGTACATTGCGTTAGTGTATCAAAAATTC 1714 Query 69932 CCTCTATGCT--ATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTAT 69989 | | |||| |||||| | || | ||||||||||| ||| ||| ||| | | ||| Sbjct 1713 C--TTTTGCTGAATCATCCTTAATTGTGAGAAGAAAACAACTACTCATCTGA-GTTTTAT 1657 Query 69990 AG-TTCCCGCATTAAA 70004 | |||| |||||||| Sbjct 1656 TGCTTCCTGCATTAAA 1641 >seq1148 Length=2199 Score = 140 bits (154), Expect = 4e-28 Identities = 300/446 (67%), Gaps = 10/446 (2%) Strand=Plus/Minus Query 69279 TGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAG 69338 ||||| |||||||||||||| ||||| | | | | ||| || || |||| |||| Sbjct 608 TGCTAAGTTACAAACTGCTACTTCATTCTCACTGGTAAATTCTAAGATTTCTGCGCATAA 549 Query 69339 ATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTT 69398 ||||| | ||| || | || | |||| ||||| | ||||| |||||| ||| || Sbjct 548 GTTACTTCCTTTTATTATTCCTAAGTTTTTTTGATTGTTTTTTTTATTACAGCTGTCTTT 489 Query 69399 GTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAA---- 69454 |||||||| | |||||||| || || ||||| | ||| ||||| | | |||| | Sbjct 488 ATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCTCTCCATAATTT 429 Query 69455 CGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCC 69514 | || | ||| || | | | || || ||||| ||||||| ||||| Sbjct 428 CTGGGCTGGTATTCTTTTCCATACTTTA----TTTTCTTTCTCATATTTCTCATATAAAT 373 Query 69515 GTTCGAATTCATCTCCCCAAACATCATCCAAT-CCAGGACATTCATTTGGACACATCAAT 69573 || |||||||| || |||| ||| |||| || || | ||||||||| | || Sbjct 372 TATCAAATTCATCACCATAAACCTCAGACAATCCCTTTGCAAT-ATTTGGACAGAATAAA 314 Query 69574 GACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 |||| | |||| || | || ||||| |||| ||| |||| |||||| ||| || Sbjct 313 CACCAATCTTCATTTTCTTCCACCTTCTTCATGAATAAATCAGGAACCCAAAGTGCTGTA 254 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 || | ||| |||| | ||||| |||||||| |||||| | | ||| | ||| || Sbjct 253 AAAATGCTTCTACTTCTCATCTCTTCTTTTCCTGTGTTTTTTCTTAAATCNAAAAANTCA 194 Query 69694 ATAATATCAGAATGCCATGGTTCTAG 69719 | || || | ||||||||| || || Sbjct 193 AGTATTTCTGGATGCCATGGCTCAAG 168 >seq74 Length=1063 Score = 98.7 bits (108), Expect = 1e-15 Identities = 272/409 (67%), Gaps = 11/409 (3%) Strand=Plus/Minus Query 69600 TTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 |||||| |||| ||| |||| |||||| ||| |||| | ||| |||| | ||||| Sbjct 1055 TTTCATGAATAAATCAGGAACCCAAAGTGCTGTAAAAATGCTTCTACTTCTCATCTCTTC 996 Query 69660 ATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 69719 |||||||| |||||| | | ||| | ||| || | || || | ||||||||| || || Sbjct 995 TTTTCCTGTGTTTTTTCTTAAATCTAAAAATTCAAGTATTTCTGGATGCCATGGCTCAAG 936 Query 69720 ATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGG-CAGTGT 69778 | | || || | | || ||| ||||| | ||| || || | | || || Sbjct 935 GAAAAATGCTATTGATGAAGCTCTTTTGTTTCCACACTGTGAAATAAATTTAGACATTGC 876 Query 69779 TATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATAT 69838 | | | | ||| | | ||| ||||| |||||||| || | || |||| |||| Sbjct 875 T-TCAAATACTTTTATCATAGGAATTATACCATTGGACGTTCCTCCTGTT---GAAAGGG 820 Query 69839 AACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGA 69898 | ||||| || | |||| | |||| | ||| ||||||||||||||||||| | Sbjct 819 GAGAGCCTCTGGCTCTGATATGAGAAATATTCACACCAATTCCTCCTGCCATTTTAGCTA 760 Query 69899 TTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT--ATCATCTATCATGTT 69956 | | | ||| | | | ||| ||| | || || | |||| |||||| | || | Sbjct 759 TGTGTGTACATTGCGTTAGTGTATCAAAAATTCC--TTTTGCTGAATCATCCTTTATTGT 702 Query 69957 AAGAAGAAAACAGCTAGACATTTGATGATGTATAG-TTCCCGCATTAAA 70004 ||||||||||| ||| ||| || | | ||| | |||| |||||||| Sbjct 701 GAGAAGAAAACAACTACTCATCTG-GGTTCTATTGCTTCCAGCATTAAA 654 >seq166 Length=1757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 |||||||| || |||||||| ||||||||||| || || ||||| | || | || Sbjct 268 CCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAGACCTGGCATCAATCCTCTTTTC 209 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 || |||||||| || | |||||| || | | |||||| || |||||||| |||||||| Sbjct 208 TTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAAAATTCCTTCTACAGCTGCAAAG 149 Query 39758 GC 39759 || Sbjct 148 GC 147 >seq8103 Length=650 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 ||||||||||| |||||| | ||||||||||| || || ||||| | || | || Sbjct 150 CCCTCATCTCTTGATATTAATACATTAGAAAATGTAAGACCTGGCATCAATCCTCTTTTC 91 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 || |||||||| || | |||||| || | | ||| ||| | |||||||| |||||||| Sbjct 90 TTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAAAAGGTTCCTTCTACAGCTGCAAAG 31 Query 39758 GC 39759 || Sbjct 30 GC 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686836442744280