Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq233 161 8e-35 seq2812 114 1e-20 seq8284 104 2e-17 seq6792 86.0 5e-12 >seq233 Length=4434 Score = 161 bits (178), Expect = 8e-35 Identities = 297/427 (70%), Gaps = 10/427 (2%) Strand=Plus/Minus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT--G 40920 || || ||| | ||||||||||| || ||||| | |||||||| ||| || || ||| | Sbjct 1719 GAGGGGGATTTAGGTCCTGTTTACGGCTTTCAATGGCGACATTATGGTGCTAATTATACG 1660 Query 40921 ACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATA 40980 || || || | || ||| ||||||||||||| ||||| || || ||||| || Sbjct 1659 AC-CTGTGAAGAA-GACTATTCCAATAAAGGAATTGATCAGTTGCAAAATGTTATTAATG 1602 Query 40981 CGATTAAATCCGATCCCGATAGCCGACGTATAATA-TTGTGCGCGTGGAACCCAACGGAC 41039 ||| || |||| |||||| || | |||| |||| | ||||| |||| | Sbjct 1601 AGATAAAGAATAATCCAGATAGCAGAAGATTAATTGTTGTTT-CATGGAATCCAATACAG 1543 Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGT 41099 | | |||||| ||||| || || ||||| |||| |||||| | ||| ||||| Sbjct 1542 CTTAAAGAGATGGCTTTGCCTCCATGCCATTTATTATTCCAGTTTAATGTTACAAATGGA 1483 Query 41100 GAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAAC 41159 || ||| || ||||||||||||||||| | ||| |||| | || ||||| Sbjct 1482 TTTTTGAATTGTGCTTTATATCAAAGATCAGGTGATGTTGGATTAGGTATACCTTTTAAT 1423 Query 41160 ATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGT 41219 ||||| |||||||| || | || || ||||| || | |||| || || |||||||| Sbjct 1422 ATAGCTAGTTATGCCATGTTAACCTACATGATAGCCTATCTTACTGATCTACAACCTGGT 1363 Query 41220 GAATTTGTTCACACGTTA--GGAGATGGACATATTTACATTAATCACATAGAGCCGTTAA 41277 |||||||| ||| ||| | ||||| ||||||||| | ||||| | || | |||| Sbjct 1362 GAATTTGT--ACATTTTATTGCAGATGCACATATTTATACCAATCATGTTGATCAATTAA 1305 Query 41278 CAGAACA 41284 ||||| Sbjct 1304 GTGAACA 1298 >seq2812 Length=2852 Score = 114 bits (126), Expect = 1e-20 Identities = 169/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| ||||| || || |||| |||| |||||| | ||| ||||| || Sbjct 2799 GATGGCTTTGCCTCCATGCCATTNNTTATTCCAGTTTAATGTTACAAATGGATTTTTGNA 2740 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 | | || ||||||||||||||||| | ||| |||| | || ||||| ||||| || Sbjct 2739 TTNTGCTTTATATCAAAGATCAGGTGATGTTGGATTAGGTATTCCTTTTAATATAGCTAG 2680 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGT 41227 |||||| || | || || ||||| || | |||| || || |||||||||||||||| Sbjct 2679 TTATGCCATGTTAACCTACATGATAGCCTATCTTACTGATCTACAACCTGGTGAATTTGT 2620 Query 41228 TCACACGTTA--GGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACA 41284 ||| ||| | ||||| ||||||||| | ||||| | || | |||| ||||| Sbjct 2619 --ACATTTTATTGCAGATGCACATATTTATACCAATCATGTTGATCAATTAAGTGAACA 2563 >seq8284 Length=1827 Score = 104 bits (114), Expect = 2e-17 Identities = 239/352 (68%), Gaps = 10/352 (3%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || |||||||||| || |||||| || | ||||| ||||| ||||| | | Sbjct 1324 ATCGGAGGATTGAAAAATGAGTTTGCTTTGTTATTTCGAAGAGCTTTTGTACAAAGAGCC 1265 Query 19303 TTTTCTGCA-GATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 ||| | || ||| | || ||||||||||| | ||||| ||| || |||| || Sbjct 1264 TTTGATTCAAGATTT-ATACAACAATTGGGAATAATGCATGTGAAGGGAATTATGCTCTA 1206 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAA- 19420 ||| ||||| || ||||||||| |||||||| ||| || | | | | || ||| | Sbjct 1205 TGGTCCACCAGGAACTGGAAAAACTTTAATTGCAAGACAAATAGGAACAATA-TTAGGAG 1147 Query 19421 --AACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 || || | |||| ||||||||||| |||||||| || ||||||| ||| || ||| Sbjct 1146 CTAAAAAGC--CCAAGATTGTAAATGGGCCTGAAATATTGAATAAATTTGTTGGGCAAAG 1089 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 || ||||| | || | | || || |||||||||||| | | | | | | | Sbjct 1088 TGAGGAAAACATTAGAAATCTTTTCAAAGAGGCTGAAGAAGAATACAGA-GCTAAAAAGG 1030 Query 19539 CAAAAGTTC-TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAA 19589 |||| || |||||||| || ||| | |||||| | || || || || || Sbjct 1029 AAAAATCTCAATTGCACATAATTATATTTGATGAAATTGATGCTATTTGCAA 978 >seq6792 Length=344 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAA--AATATG 40920 || || ||| | |||||||||||||| ||||| | |||||||| ||| || | ||| | Sbjct 257 GAGGGGGATTTAGGTCCTGTTTATGGCTTTCAATGGCGACATTATGGTGCTAGTTATACG 198 Query 40921 ACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATA 40980 || || || | || ||| ||||||||||||| |||||||| || ||||| || Sbjct 197 AC-CTGTG-AAGAAGACTATTCCAATAAAGGAATTGATCAATTGCAAAATGTTATTAATG 140 Query 40981 CGATTAAATCCGATCCCGATAGCCGACGTATAA-TATTGTGCGCGTGGAACCCAACGGAC 41039 ||| || |||| |||||| || | ||| | |||| | ||||| |||| | Sbjct 139 AGATAAAGAATAATCCAGATAGCAGAAGATTAATTGTTGT-TTCATGGAATCCAATACAG 81 Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGG 41098 | | |||||| ||||| || || ||||| |||| |||||| | ||| ||||| Sbjct 80 CTTAAAGAGATGGCTTTGCCTCCATGCCATTTATTATTCCAGTTTAATGTTACAAATGG 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397415179654135