Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1083 120 1e-22 seq678 84.2 1e-11 >seq1083 Length=2713 Score = 120 bits (132), Expect = 1e-22 Identities = 197/284 (69%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 65093 CCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCC 65152 ||||| ||||| | |||| |||||| |||||||| |||||||||| |||||| || ||| Sbjct 1319 CCAAATTGACCTTCTGGCTGTAATAAGTTAATATTATTTGAACCAACAAAATTTTGTGCC 1260 Query 65153 ATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAG 65212 || ||||| | | | ||| | || ||||||||||| | || ||||| Sbjct 1259 ATAGAAATAATAGTCGAACATAACGAAGTGTCTCCGTGATGATAAGCACTTTGCTCAGAA 1200 Query 65213 ACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAA 65272 ||||| ||| ||||| | || |||||||| | |||| || |||||||||||||| Sbjct 1199 ACATAACCAGCAAATTCTGATACCTTTATTTCATTCTTTAATTTTCTTTTAAATGCAGAA 1140 Query 65273 TACAATATTTTCCGTAAACTAATTTTCAATCCATCCATTAAATTAGGAATGCTTCTGTCA 65332 |||| ||||| | | | || || ||||| |||||||| ||||||| | | Sbjct 1139 AACAAAATTTTTCTTTGTCCTGGCTTTAAACCATCACAGAAATTAGGGATGCTTCGGATA 1080 Query 65333 CAATCATATTTTGAGAAATGTATGAATTCTTTGTTAATAAATTC 65376 ||| ||||||| || ||||| ||||||| ||| || Sbjct 1079 TTGTCAGCCATTGAGAATAAAATAAATTCCTTGTTAACAAAATC 1036 Score = 87.8 bits (96), Expect = 8e-13 Identities = 268/405 (66%), Gaps = 24/405 (6%) Strand=Plus/Minus Query 65751 AAACAAATTAATACACAACCCTTTAATATGATGA-CCATCCAAATCCGCGTCTGTCATAA 65809 ||| ||||| || || ||||| ||||| ||| ||||| |||| ||| ||||| | Sbjct 654 AAAGAAATTTATGATTAATCCTTTGATATG-TGATCCATCATGATCCTGGTCAGTCATGA 596 Query 65810 TAAGAACACGACCATATCTCAAATCAT---TTGTATCACTGTATTCACGACCAGT-TTCC 65865 | | ||| | |||||||| || | | |||||| | || || | || || || Sbjct 595 TTAAGACATGTCCATATCTTAAGCCTTGGGTTGTATTA---TAAACA-GTCCCGTGTTTT 540 Query 65866 AAACCAAGTAtttttttAATTTCAGCAATTTCCTTGTTTTCACTAATCTTTTTGATGTTT 65925 || || | ||||| || | | || ||||| |||||||||||||||| || | ||| Sbjct 539 AACCCTAATATTTGCTTTAGTGCACTTATTTCTTTGTTTTCACTAATCTGCTTAACATTT 480 Query 65926 TCACCACGCACATTTAATATTTTCCCCTTCATTGGATATACACCATAAGAATTTCTATCT 65985 | | | |||||||| | ||| || || | |||| | || |||||| ||| ||| || Sbjct 479 GCCTCTCTTACATTTAACANTTTTCCTTTTAATGGAAACACTCCATAAAAATCTCTTCCT 420 Query 65986 TCTGAAGAGAGACCAGAAACAA-TACCGGCTTTTGCGGAATCTCCTTCACAAAAGATAAT 66044 || | || ||||||||| || | ||| || ||||||||||| || || | Sbjct 419 ACTNCACTCAGTCCAGAAACAGCTAATGTCTTG-GCAGAATCTCCTTCGGTTAAAATTAG 361 Query 66045 AGTGCATTCAGATGAACGTTCAGTTCCTGCCCAATTGGCATCAATCAATTTTGGAAT--- 66101 ||| |||| ||| | || |||||| ||| ||||| ||||||| ||| Sbjct 360 AGTACATTTAGAGCTATTAGCACGTCCTGCATTATTTGCATCCTCTAATTTTGCAATCAA 301 Query 66102 ---TCC---ACGGATATTTTTCGTTTTAGTTCCATCCGttttttt 66140 ||| | | |||||||| |||| |||||| ||||||| Sbjct 300 TTCTCCTGTAAGTTTATTTTTC---TTAGATCCATCACTTTTTTT 259 >seq678 Length=924 Score = 84.2 bits (92), Expect = 1e-11 Identities = 200/293 (68%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 65770 CCTTTAATATGATGA-CCATCCAAATCCGCGTCTGTCATAATAAGAACACGACCATATCT 65828 ||||| ||||| ||| ||||| |||| ||| ||||| || | ||| | |||||||| Sbjct 10 CCTTTGATATG-TGATCCATCATGATCCTGGTCAGTCATGATTAAGACATGTCCATATCT 68 Query 65829 CAAATCAT---TTGTATCACTGTATTCACGACCAGT-TTCCAAACCAAGTAtttttttAA 65884 || | | |||||| | || || | || || || || || | ||||| || | Sbjct 69 TAAGCCTTGGGTTGTATTA---TAAACA-GTCCCGTGTTTTAACCCTAATATTTGCTTTA 124 Query 65885 TTTCAGCAATTTCCTTGTTTTCACTAATCTTTTTGATGTTTTCACCACGCACATTTAATA 65944 | || ||||| |||||||||||||||| || | ||| | | | |||||||| | Sbjct 125 GTGCACTTATTTCTTTGTTTTCACTAATCTGCTTAACATTTGCTTCTCTTACATTTAACA 184 Query 65945 TTTTCCCCTTCATTGGATATACACCATAAGAATTTCTATCTTCTGAAGAGAGACCAGAAA 66004 |||| || || | |||| | || |||||| ||| ||| || || | || ||||||| Sbjct 185 TTTTTCCTTTTAATGGAAACACTCCATAAAAATCTCTTCCTACTACACTCAGTCCAGAAA 244 Query 66005 CA-ATACCGGCTTTTGCGGAATCTCCTTCACAAAAGATAATAGTGCATTCAGA 66056 || || | | || || ||||||||||| || || | ||| |||| ||| Sbjct 245 CAGCTAATGTC-TTGGCAGAATCTCCTTCGGTTAAAATTAGAGTACATTTAGA 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235655794706550