Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1856 197 2e-45 seq1148 183 4e-41 seq4813 134 2e-26 seq166 104 3e-17 seq8103 89.7 7e-13 >seq1856 Length=1984 Score = 197 bits (218), Expect = 2e-45 Identities = 402/594 (68%), Gaps = 15/594 (3%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||||||||||||| || ||| |||||||| |||||||| ||||||||||| || Sbjct 1459 ACATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAG 1400 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||| | ||| | ||| || |||||||| || | || || || | | |||||| Sbjct 1399 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 1340 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC----GTTGT 48315 || |||||||| || ||||| ||| | || || || | | || || | | Sbjct 1339 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATCTGAAGCAAT 1280 Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 |||| | |||||| || ||||| ||| | || ||| |||||| | |||| Sbjct 1279 GTATTT----TAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCAT 1224 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATA 48433 |||| || || || || | ||| ||| | || || | ||||| ||| Sbjct 1223 TAAATAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGA--ATA 1166 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| || || || || ||| || || || || || ||||| ||| ||||||| Sbjct 1165 CATCTCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGG 1106 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 ||||| ||||| | ||||| | |||||| ||| || | || || |||||| || Sbjct 1105 TATCTGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGC 1046 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT---TTATT 48610 ||||||||||| | ||||||||||||||||| | |||| | | ||| | || | Sbjct 1045 CGCAAAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTC 986 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||| ||| |||| | || ||| ||||| |||| ||||||||| ||| ||||||| Sbjct 985 CCATTCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGC 926 Query 48671 TTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 | ||||||||| | |||||| | ||||| || ||||| | |||||| || Sbjct 925 TAATTTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCT 872 >seq1148 Length=2199 Score = 183 bits (202), Expect = 4e-41 Identities = 588/894 (66%), Gaps = 24/894 (3%) Strand=Plus/Minus Query 76769 ATTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACA 76827 |||||| ||| | |||||||| ||| | ||| || |||| ||| | ||| || |||| Sbjct 1599 ATTCTTTATCAACTGTAAACTTAATAGCAGATGACTTAGGTTGTGTCCTTAGGTAATACA 1540 Query 76828 TACCAGTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTT-TGGAATA 76885 | || || |||| ||||| || ||| || ||||||||||| || || || | | | || Sbjct 1539 TTCCTGTCTTTA-ACCCATTCTTCCAACCATAGAAATGCATACTAGTAAGCTGTTGCATT 1481 Query 76886 ACTAGGATCGGCT-ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTAT 76944 | ||| | || ||| |||||| | |||||| | ||||| || || | ||||||| Sbjct 1480 GTT-GGA-CTACTCATAAAAATATTTAAGGACTGAGTCTGATCAATAAATGGTCCTCTAC 1423 Query 76945 CAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTT 77004 || | | | | ||||| |||| | ||||| | ||||| ||| | Sbjct 1422 CAACTGATAAATCAATAATACTCTTCATTTTATACTCCCATACTGTTTTATAAATGTCCC 1363 Query 77005 TGATATCATCTGGAA-----GGTTTGTATTTTGAATGGAACCACCAT-CTGATATAATTG 77058 | || || | || | ||| ||| ||||||| || || ||| |||| || | | Sbjct 1362 TTATTTCTTTAGGTATTATGGGTATGT--TTTGAATAGATCCTTCATTCTGA-ATCAATA 1306 Query 77059 TATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGAT 77118 ||| || || || | ||||||||| || ||| ||||| | | | | ||| || Sbjct 1305 AATTTTTGATTTCTTTGTTCCACAATCCTCTTTCTATTAAATCCTTCAATAAATGTTTAT 1246 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 ||| || ||| ||||||||| |||| || | |||||||| ||| ||| |||||| Sbjct 1245 TAATTACCTGATATTCTCCAGCCAATGTTCGTCTTGTGTAAATGTTAGAAGTAAATGGTT 1186 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | ||||||| || | ||||| | |||| ||| ||||||||| || | Sbjct 1185 CAATGCATTCATTAAACCCAAGTATTTGTGAGGTAGTAGCTGTTGGCATACAAGCAGTTA 1126 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 | ||| ||| || | |||||| | ||||||||| | | ||| | | |||||| || Sbjct 1125 ACAAAGAATTCCTTACTCCATGTTTAATGATTTTATTTCTAAGAGACTCCCAATCTAAAT 1066 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATC 77358 ||| |||| ||||| ||| | ||| |||| | ||| ||| | | ||||| Sbjct 1065 GATTACTAGGTTTAACATTCCACATATCAAATTGAAATTCTCCTTTAGAAATAGGTGATC 1006 Query 77359 CATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTC 77418 | | | | | | ||||| ||||||| | ||| | | |||| |||| |||||| Sbjct 1005 CTTCAAAAGATGAATAAGCTCCTTCTTCTATAGCCAATAGGTTACTCTCTTCTAATGCTG 946 Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCAATACTATCAAAC 77477 | || ||||| ||| || || || |||| | || || | ||||| |||||| Sbjct 945 CATAGTAAATACATTCAAAGATATTTCTATTTA-ATATTTTAGCTTCCTCGGAATCAAAT 887 Query 77478 GGATAATGTAAAAGAAT---AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 | ||| | ||| | || ||| ||| ||||| || || |||||||||||||| ||| Sbjct 886 G-ATATTTTAA--GCATGGCAAATAAATCAGCTAAGCCTTGTACTCCAATACCAATGGGT 830 Query 77535 CTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATT 77594 ||||| | | ||| | |||| ||||| | ||| ||| |||| || || ||| Sbjct 829 CTATGCTTAATGTTGCTACTTTTTGCTTCAACTACAGGGTAAAAATTGTAATCAATTATT 770 Query 77595 TTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA 77648 || || | ||||||| ||| || || || ||| ||| |||| ||||||| Sbjct 769 TTGTTTAAATTTCTACAAACAACCTTTGTTACTTCCATTAATTTAGAAAAATCA 716 Score = 122 bits (134), Expect = 1e-22 Identities = 306/459 (67%), Gaps = 14/459 (3%) Strand=Plus/Minus Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735 ||||| ||| ||||| |||||||||||||| ||||| | ||| | ||| || || Sbjct 619 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCATTCTCACTGGTAAATTCTAAGATT 560 Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || | |||| ||||| | ||| || | || | |||| ||| ||| | |||||||| Sbjct 559 TCTGCGCATAAGTTACTTCCTTTTATTATTCCTAAGTTTTTTTGATTGTTTTTTTTATTA 500 Query 77796 CATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGAT 77855 || ||| ||||||||||| | ||||| || || || ||||||| ||| ||||| | | Sbjct 499 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 440 Query 77856 TTCCAGACGACTCT-AGCTTTTATCAT-----AGATTTGTATCGCCTCTCTCTTTCATAT 77909 |||| | ||| ||| ||| | | | || ||| | ||| | |||||| Sbjct 439 CTCCATA-ATTTCTGGGCTGGTATTCTTTTCCATACTT-TAT----TTTCTTTCTCATAT 386 Query 77910 TGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT-CCAGGGCATTCATT 77968 | ||||| ||||||||||| || |||| ||| |||| || ||| | ||| Sbjct 385 TTCTCATATAAATTATCAAATTCATCACCATAAACCTCAGACAATCCCTTTGCAAT-ATT 327 Query 77969 TGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTAT 78028 ||| || | || |||| || ||| ||| | || ||||| || | |||||| | Sbjct 326 TGGACAGAATAAACACCAATCTTCATTTTCTTCCACCTTCTTCATGAATAAATCAGGAAC 267 Query 78029 CCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAG 78088 ||| || || |||| | || |||| ||||| |||||||| || ||| | | Sbjct 266 CCAAAGTGCTGTAAAAATGCTTCTACTTCTCATCTCTTCTTTTCCTGTGTTTTTTCTTAA 207 Query 78089 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 78127 ||| | ||| || | || || | ||||||||| || || Sbjct 206 ATCNAAAAANTCAAGTATTTCTGGATGCCATGGCTCAAG 168 >seq4813 Length=2720 Score = 134 bits (148), Expect = 2e-26 Identities = 503/777 (65%), Gaps = 23/777 (3%) Strand=Plus/Minus Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735 ||||| ||| ||||| |||||||||||||| || || | ||| | ||| || || Sbjct 2374 AAAGCAATACTTGCTAAGTTACAAACTGCTACTTCGTTCTCACTGGTAAATTCTAAGATT 2315 Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || | |||| ||||| | ||| | | || | |||| ||||||| | |||||||| Sbjct 2314 TCTGCGCATAAGTTACTTCCTTTTAATATTCCTAAGTTTTTTTGGTTGTTTTTTTTATTA 2255 Query 77796 CATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGAT 77855 || ||| ||||||||||| | ||||| || || || ||||||| ||| ||||| | | Sbjct 2254 CAGCTGTCTTTATAAAGAATGTATGGAGTACCTGTCTCTATCTGTGCTTCAATAATTGCT 2195 Query 77856 TTCCAGACGACTCT-AGCTTTTATCAT-----AGATTTGTATCGCCTCTCTCTTTCATAT 77909 |||| | ||| ||| ||| | | | || ||| | ||| | |||||| Sbjct 2194 CTCCATA-ATTTCTGGGCTGGTATTCTTTTCCATACTT-TAT----TTTCTTTCTCATAT 2141 Query 77910 TGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT-CCAGGGCATTCATT 77968 | ||||| ||||||||||| || |||| ||| |||| || ||| | ||| Sbjct 2140 TTCTCATATAAATTATCAAATTCATCACCATAAACCTCAGACAATCCCTTTGCAAT-ATT 2082 Query 77969 TGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTAT 78028 ||| || | || |||| || ||| ||| | || ||||| || | |||||| | Sbjct 2081 TGGACAGAATAAACACCAATCTTCATTTTCTTCCACCTTCTTCATGAATAAATCAGGAAC 2022 Query 78029 CCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAG 78088 ||| || || |||| | || |||| ||||| |||||||| || ||| | | Sbjct 2021 CCAAAGTGCTGTAAAAATGNTTCTACTTCTCATCTCTTCTTTTCCTGTGTTTTTTCTTAA 1962 Query 78089 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGG 78148 ||| | ||| || | || || | ||||||||| || || | | ||| || | || Sbjct 1961 ATCTAAAAATTCAAGTATTTCTGGATGCCATGGCTCAAGGAAAAATGCTATTGATGAAGC 1902 Query 78149 TCGTTTATTACCTCCCTGATCTATATATCT-GGCGGTGTTATTATAAACTCTCAACATTG 78207 || ||| || || | || ||| || | | | || | | | | ||| | | ||| | Sbjct 1901 TCTTTTGTTTCCACATTGTGAAATAAATTTAGACATTGCT-TCAAATACTTTTATCATAG 1843 Query 78208 GAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATAT 78267 |||| ||||| || || ||||| |||| |||| | || || || | |||| Sbjct 1842 GAATTATACCATTGGACGTTCCTCCTGTT---GAAAGGGGAGAGCCTCTGGCTCTGATAT 1786 Query 78268 TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG 78327 | ||| | || |||||||||||||| |||| ||| | | || | | | || Sbjct 1785 GAGAAATATTCACACCAATTCCTCCTGCCATTTTAGCTATGTGTGTACATTGCGTTAGTG 1726 Query 78328 TATCGTAGATACCCTCTATACTG--TCATCCATCATGTTAAGAAGAAAACAGCTAGACAT 78385 |||| | || || | | ||| |||||| | || | ||||||||||| ||| ||| Sbjct 1725 TATCAAAAATTCC--TTTTGCTGAATCATCCTTAATTGTGAGAAGAAAACAACTACTCAT 1668 Query 78386 TTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTT 78442 ||| | | ||||||||||||| | || || | ||||| |||| |||| Sbjct 1667 CTGAGTTTTATTGCTTCCTGCATTAAAAAGTGATGGTGTGGCATGTATAAAGTATTT 1611 >seq166 Length=1757 Score = 104 bits (114), Expect = 3e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||||||||||||| || ||| ||||| || |||||||| ||||||||||| || Sbjct 290 ACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAG 231 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||| | ||| | ||| || |||||||| || | || || || | | |||||| Sbjct 230 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 171 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 || |||||||| || ||||| ||| | || || || Sbjct 170 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATC 135 >seq8103 Length=650 Score = 89.7 bits (98), Expect = 7e-13 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||||||||||||| || ||| |||||||| |||||| | ||||||||||| || Sbjct 171 ACATGCAAAATCAGTGTGGC-ACCCTCATCTCTTGATATTAATACATTAGAAAATGTAAG 113 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||| | ||| | ||| || |||||||| || | || || || | | ||| || Sbjct 112 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAAAA 53 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | |||||||| || ||||| ||| | || || || Sbjct 52 GGTTCCTTCTACAGCTGCAAAGGCGATTAGCCTATC 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694595625325280