Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anncaliia_20algerae_20[genbank_20GCA_5F000313815.1_202012-06-06] 8,427 sequences; 13,823,425 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1856 214 3e-50 seq166 98.7 1e-15 >seq1856 Length=1984 Score = 214 bits (236), Expect = 3e-50 Identities = 403/590 (68%), Gaps = 7/590 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||||||||||||| || || |||||||| |||||||| ||||||||||| || Sbjct 1459 ACATGCAAAATCAGTGTGGCAACCCTCATCTCTTGATATTAATTCATTAGAAAATGTAAG 1400 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || ||||| | ||| | || || |||||||| |||| || || || | | |||||| Sbjct 1399 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 1340 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 || ||||||||||| || || |||| || || || | | || ||| | ||| Sbjct 1339 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATCTGAAGCAAT 1280 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 | || ||||| || ||||||||| | || ||| |||||| | |||||||| Sbjct 1279 GTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAAA 1220 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATT 46926 || || || || ||| ||| ||| | || || | ||||| |||||| Sbjct 1219 TAGCCTATTCTTCTCTTCAGAATCAGAAACCAACACTTCAATAAGCAAAGA--ATACATC 1162 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || ||||| || ||| ||||| || || || ||||| ||||||||| | ||| Sbjct 1161 TCAGAATGGATTACTTCCATAGCTATTTGGAAGGAATAAAATGCTCTTGCTTCTGGTATC 1102 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || ||||| | ||||| | ||| || ||| || | || || |||||| || ||| Sbjct 1101 TGAACCTCACTTGCAAATCTTACAGCCAGATTTTCCATAACAATACCATCAGATGCCGCA 1042 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCCAG 47103 |||||||| | ||||||||||||||||| | ||||||| | ||| | || | ||| Sbjct 1041 AAAAATGCGAGTACATGTTTAATAAAATTTCTTTCATCTTCATTCAATCTGTTTTCCCAT 982 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 ||| |||| | || ||| ||||| |||| |||||| || || |||||||| | Sbjct 981 TCAAACTTATCAACAGTTAAATCAACTTCCTCAGTTGTCCAAAACGATCCCTCTGCTAAT 922 Query 47164 TTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 |||||||| | |||||| | | |||| || || || | |||||| || Sbjct 921 TTATACATTTCCCATATTTTGGGGTATTTAATAGGGAACAAAACAAACCT 872 >seq166 Length=1757 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||||||||||||| || || ||||| || |||||||| ||||||||||| || Sbjct 290 ACATGCAAAATCAGTGTGNCAACCCTCATCNCTTGATATTAATTCATTAGAAAATGTAAG 231 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || ||||| | ||| | || || |||||||| |||| || || || | | |||||| Sbjct 230 ACCTGGCATCAATCCTCTTTTCTTTAGCCAAAAAATAGAAGCAAAGGAGCTACTAAAGAA 171 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 || ||||||||||| || || |||| || || || | | || ||| | ||| Sbjct 170 AATTCCTTCTACAGCTGCAAAGGCGATTAGCCTATCGCTAAAGGGGGAATCTGAAGCAAT 111 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 | || ||||| || ||||||||| | || ||| |||||| | |||||||| Sbjct 110 GTATTTTAATGCCCATTCGGCCTTTTTCCTGACTATAGGTATTGTTGAAACTGCATTAAA 51 Query 46869 GAG 46871 || Sbjct 50 TAG 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712859301272640